Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y97


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y97 entry

There are 3 chains in PDB entry 5Y97 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 4LEU 44
B
 ASN 48THR 253
C
 ASN 1TYR 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5Y97. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 11Right-handed 310
Helix 2
AA2
A
12 27Right-handed alpha
Helix 3
AA3
B
92 99Right-handed alpha
Helix 4
AA4
B
113 122Right-handed alpha
Helix 5
AA5
B
131 144Right-handed alpha
Helix 6
AA6
B
149 167Right-handed alpha
Helix 7
AA7
B
167 180Right-handed alpha
Helix 8
AA8
B
187 208Right-handed alpha
Helix 9
AA9
B
235 240Right-handed alpha
Helix 10
AB1
C
14 16Right-handed 310
Helix 11
AB2
C
24 26Right-handed 310
Helix 12
AB3
C
64 69Right-handed alpha
Helix 13
AB4
C
82 86Right-handed 310
Helix 14
AB5
C
144 146Right-handed 310
Helix 15
AB6
C
237 241Right-handed 310
Helix 16
AB7
C
255 259Right-handed 310
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There are 10 sheets in PDB entry 5Y97. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 7first strand
Strand 2
B
50 56parallel
Strand 3
B
62 68anti-parallel
Strand 4
B
73 79anti-parallel
Strand 5
B
84 87anti-parallel
Strand 6
B
104 107parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 34first strand
Strand 2
A
37 40anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 221first strand
Strand 2
B
227 232anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
130 131first strand
Strand 2
C
7 13anti-parallel
Strand 3
C
45 49anti-parallel
Strand 4
C
54 56anti-parallel
Strand 5
C
59 63anti-parallel
Strand 6
C
72 75anti-parallel
Strand 7
C
31 37anti-parallel
Strand 8
C
18 22anti-parallel
Strand 9
C
7 13anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
88 89first strand
Strand 2
C
95 96anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
103 107first strand
Strand 2
C
116 120anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
181 183first strand
Strand 2
C
172 175anti-parallel
Strand 3
C
138 143anti-parallel
Strand 4
C
261 263anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
148 153first strand
Strand 2
C
158 163anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
189 198first strand
Strand 2
C
201 208anti-parallel
Strand 3
C
248 249anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
218 219first strand
Strand 2
C
225 226anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il