Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y9E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Y9E entry

There are 4 chains in PDB entry 5Y9E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 20	LEU 473
B	LYS 20	LEU 473
C	LYS 20	LEU 473
D	LYS 20	ASP 25

There are 72 helices in PDB entry 5Y9E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	27	Right-handed 310
Helix 2	AA2	A	80	84	Right-handed 310
Helix 3	AA3	A	209	214	Right-handed alpha
Helix 4	AA4	A	233	240	Right-handed alpha
Helix 5	AA5	A	272	276	Right-handed 310
Helix 6	AA6	A	280	284	Right-handed 310
Helix 7	AA7	A	303	305	Right-handed 310
Helix 8	AA8	A	324	326	Right-handed 310
Helix 9	AA9	A	337	339	Right-handed 310
Helix 10	AB1	A	355	357	Right-handed 310
Helix 11	AB2	A	383	394	Right-handed alpha
Helix 12	AB3	A	394	402	Right-handed alpha
Helix 13	AB4	A	438	443	Right-handed 310
Helix 14	AB5	A	457	460	Right-handed 310
Helix 15	AB6	A	461	472	Right-handed alpha
Helix 16	AB7	B	23	27	Right-handed 310
Helix 17	AB8	B	80	84	Right-handed 310
Helix 18	AB9	B	209	214	Right-handed alpha
Helix 19	AC1	B	221	226	Right-handed alpha
Helix 20	AC2	B	233	239	Right-handed alpha
Helix 21	AC3	B	272	276	Right-handed 310
Helix 22	AC4	B	280	284	Right-handed 310
Helix 23	AC5	B	303	305	Right-handed 310
Helix 24	AC6	B	324	326	Right-handed 310
Helix 25	AC7	B	355	357	Right-handed 310
Helix 26	AC8	B	383	394	Right-handed alpha
Helix 27	AC9	B	395	402	Right-handed alpha
Helix 28	AD1	B	438	443	Right-handed 310
Helix 29	AD2	B	457	460	Right-handed 310
Helix 30	AD3	B	461	472	Right-handed alpha
Helix 31	AD4	C	23	27	Right-handed 310
Helix 32	AD5	C	80	84	Right-handed 310
Helix 33	AD6	C	209	214	Right-handed alpha
Helix 34	AD7	C	233	239	Right-handed alpha
Helix 35	AD8	C	272	276	Right-handed 310
Helix 36	AD9	C	280	284	Right-handed 310
Helix 37	AE1	C	303	305	Right-handed 310
Helix 38	AE2	C	355	357	Right-handed 310
Helix 39	AE3	C	383	394	Right-handed alpha
Helix 40	AE4	C	395	402	Right-handed alpha
Helix 41	AE5	C	438	443	Right-handed 310
Helix 42	AE6	C	457	460	Right-handed 310
Helix 43	AE7	C	461	472	Right-handed alpha
Helix 44	AE8	D	23	27	Right-handed 310
Helix 45	AE9	D	80	84	Right-handed 310
Helix 46	AF1	D	209	214	Right-handed alpha
Helix 47	AF2	D	233	239	Right-handed alpha
Helix 48	AF3	D	272	276	Right-handed 310
Helix 49	AF4	D	280	284	Right-handed 310
Helix 50	AF5	D	303	305	Right-handed 310
Helix 51	AF6	D	324	326	Right-handed 310
Helix 52	AF7	D	337	339	Right-handed 310
Helix 53	AF8	D	355	357	Right-handed 310
Helix 54	AF9	D	383	394	Right-handed alpha
Helix 55	AG1	D	394	402	Right-handed alpha
Helix 56	AG2	D	457	460	Right-handed 310
Helix 57	AG3	D	461	472	Right-handed alpha
Helix 58	AG4	E	23	27	Right-handed 310
Helix 59	AG5	E	80	84	Right-handed 310
Helix 60	AG6	E	209	214	Right-handed alpha
Helix 61	AG7	E	233	240	Right-handed alpha
Helix 62	AG8	E	272	276	Right-handed 310
Helix 63	AG9	E	280	284	Right-handed 310
Helix 64	AH1	E	303	305	Right-handed 310
Helix 65	AH2	E	324	326	Right-handed 310
Helix 66	AH3	E	337	339	Right-handed 310
Helix 67	AH4	E	355	357	Right-handed 310
Helix 68	AH5	E	383	394	Right-handed alpha
Helix 69	AH6	E	394	402	Right-handed alpha
Helix 70	AH7	E	438	443	Right-handed 310
Helix 71	AH8	E	457	460	Right-handed 310
Helix 72	AH9	E	461	472	Right-handed alpha

There are 39 sheets in PDB entry 5Y9E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	38	first strand
Strand 2	A	359	381	anti-parallel
Strand 3	A	97	110	anti-parallel
Strand 4	A	310	312	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	38	first strand
Strand 2	A	359	381	anti-parallel
Strand 3	A	42	46	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	347	first strand
Strand 2	A	359	381	anti-parallel
Strand 3	B	266	267	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	296	first strand
Strand 2	A	248	262	anti-parallel
Strand 3	A	154	161	anti-parallel
Strand 4	A	328	335	anti-parallel
Strand 5	A	72	77	anti-parallel
Strand 6	A	446	449	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	296	first strand
Strand 2	A	248	262	anti-parallel
Strand 3	C	300	301	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	124	first strand
Strand 2	A	146	150	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	194	first strand
Strand 2	A	166	172	anti-parallel
Strand 3	A	229	232	anti-parallel
Strand 4	A	200	201	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	267	first strand
Strand 2	C	359	381	parallel
Strand 3	C	97	110	anti-parallel
Strand 4	C	310	312	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	46	first strand
Strand 2	C	359	381	anti-parallel
Strand 3	C	29	38	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	267	first strand
Strand 2	C	359	381	parallel
Strand 3	C	342	347	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	301	first strand
Strand 2	B	248	262	anti-parallel
Strand 3	B	291	296	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	301	first strand
Strand 2	B	248	262	anti-parallel
Strand 3	B	154	161	anti-parallel
Strand 4	B	328	335	anti-parallel
Strand 5	B	72	77	anti-parallel
Strand 6	B	446	449	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	38	first strand
Strand 2	B	359	381	anti-parallel
Strand 3	B	97	110	anti-parallel
Strand 4	B	310	312	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	38	first strand
Strand 2	B	359	381	anti-parallel
Strand 3	B	42	46	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	347	first strand
Strand 2	B	359	381	anti-parallel
Strand 3	E	266	267	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	54	first strand
Strand 2	B	57	63	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	124	first strand
Strand 2	B	146	150	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	194	first strand
Strand 2	B	166	172	anti-parallel
Strand 3	B	229	232	anti-parallel
Strand 4	B	200	201	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	301	first strand
Strand 2	E	248	262	anti-parallel
Strand 3	E	291	296	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	301	first strand
Strand 2	E	248	262	anti-parallel
Strand 3	E	154	161	anti-parallel
Strand 4	E	328	335	anti-parallel
Strand 5	E	72	77	anti-parallel
Strand 6	E	446	449	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	61	63	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	291	296	first strand
Strand 2	C	248	262	anti-parallel
Strand 3	C	154	161	anti-parallel
Strand 4	C	328	335	anti-parallel
Strand 5	C	72	77	anti-parallel
Strand 6	C	446	449	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	291	296	first strand
Strand 2	C	248	262	anti-parallel
Strand 3	D	300	301	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	124	first strand
Strand 2	C	146	150	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	194	first strand
Strand 2	C	166	172	anti-parallel
Strand 3	C	229	232	anti-parallel
Strand 4	C	200	201	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	267	first strand
Strand 2	D	359	381	parallel
Strand 3	D	97	110	anti-parallel
Strand 4	D	310	312	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	46	first strand
Strand 2	D	359	381	anti-parallel
Strand 3	D	29	38	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	267	first strand
Strand 2	D	359	381	parallel
Strand 3	D	342	347	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	53	first strand
Strand 2	D	61	63	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	291	296	first strand
Strand 2	D	248	262	anti-parallel
Strand 3	D	154	161	anti-parallel
Strand 4	D	328	335	anti-parallel
Strand 5	D	72	77	anti-parallel
Strand 6	D	446	449	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	291	296	first strand
Strand 2	D	248	262	anti-parallel
Strand 3	E	300	301	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	124	first strand
Strand 2	D	146	150	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	188	194	first strand
Strand 2	D	166	172	anti-parallel
Strand 3	D	229	232	anti-parallel
Strand 4	D	200	201	parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	267	first strand
Strand 2	E	359	381	parallel
Strand 3	E	97	110	anti-parallel
Strand 4	E	310	312	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	46	first strand
Strand 2	E	359	381	anti-parallel
Strand 3	E	29	38	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	267	first strand
Strand 2	E	359	381	parallel
Strand 3	E	342	347	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	53	first strand
Strand 2	E	61	63	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	124	first strand
Strand 2	E	146	150	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	188	194	first strand
Strand 2	E	166	172	anti-parallel
Strand 3	E	229	232	anti-parallel
Strand 4	E	200	201	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Y9E

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y9E