Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y9H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Y9H entry

There are 2 chains in PDB entry 5Y9H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 21	SER 466
B	MET 21	ALA 281

There are 5 helices in PDB entry 5Y9H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	241	246	Right-handed alpha
Helix 2	AA2	B	241	246	Right-handed alpha
Helix 3	AA3	B	389	394	Right-handed alpha
Helix 4	AA4	C	241	246	Right-handed alpha
Helix 5	AA5	C	389	394	Right-handed alpha

There are 28 sheets in PDB entry 5Y9H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	31	first strand
Strand 2	A	45	52	anti-parallel
Strand 3	A	115	122	anti-parallel
Strand 4	A	87	93	anti-parallel
Strand 5	A	72	79	anti-parallel
Strand 6	A	67	69	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	40	first strand
Strand 2	A	126	128	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	A	107	110	anti-parallel
Strand 3	A	59	64	anti-parallel
Strand 4	A	137	142	anti-parallel
Strand 5	A	160	162	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	134	first strand
Strand 2	A	165	167	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	180	first strand
Strand 2	A	194	202	anti-parallel
Strand 3	A	266	272	anti-parallel
Strand 4	A	235	240	anti-parallel
Strand 5	A	224	228	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	185	first strand
Strand 2	A	301	317	parallel
Strand 3	A	282	294	anti-parallel
Strand 4	A	207	212	anti-parallel
Strand 5	A	257	263	anti-parallel
Strand 6	A	248	254	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	188	first strand
Strand 2	A	278	279	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	328	first strand
Strand 2	A	342	349	anti-parallel
Strand 3	A	415	420	anti-parallel
Strand 4	A	383	388	anti-parallel
Strand 5	A	372	376	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	337	first strand
Strand 2	A	425	427	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	402	first strand
Strand 2	A	405	411	anti-parallel
Strand 3	A	355	360	anti-parallel
Strand 4	A	431	440	anti-parallel
Strand 5	A	456	463	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	31	first strand
Strand 2	B	45	52	anti-parallel
Strand 3	B	115	122	anti-parallel
Strand 4	B	87	93	anti-parallel
Strand 5	B	75	79	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	36	first strand
Strand 2	B	156	169	parallel
Strand 3	B	132	142	anti-parallel
Strand 4	B	59	63	anti-parallel
Strand 5	B	107	110	anti-parallel
Strand 6	B	98	99	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	B	126	128	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	180	first strand
Strand 2	B	196	201	anti-parallel
Strand 3	B	266	268	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	254	first strand
Strand 2	B	257	263	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	283	294	anti-parallel
Strand 5	B	301	315	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	228	first strand
Strand 2	B	235	240	anti-parallel
Strand 3	B	270	272	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	328	first strand
Strand 2	B	342	350	anti-parallel
Strand 3	B	415	420	anti-parallel
Strand 4	B	383	388	anti-parallel
Strand 5	B	372	376	anti-parallel
Strand 6	B	364	365	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	336	first strand
Strand 2	B	426	427	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	402	first strand
Strand 2	B	405	411	anti-parallel
Strand 3	B	355	360	anti-parallel
Strand 4	B	430	439	anti-parallel
Strand 5	B	457	464	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	31	first strand
Strand 2	C	45	52	anti-parallel
Strand 3	C	115	122	anti-parallel
Strand 4	C	87	92	anti-parallel
Strand 5	C	75	79	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	39	first strand
Strand 2	C	127	128	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	99	first strand
Strand 2	C	107	110	anti-parallel
Strand 3	C	59	63	anti-parallel
Strand 4	C	131	142	anti-parallel
Strand 5	C	160	168	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	180	first strand
Strand 2	C	194	201	anti-parallel
Strand 3	C	266	272	anti-parallel
Strand 4	C	235	240	anti-parallel
Strand 5	C	224	228	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	185	first strand
Strand 2	C	301	317	parallel
Strand 3	C	282	294	anti-parallel
Strand 4	C	207	212	anti-parallel
Strand 5	C	257	263	anti-parallel
Strand 6	C	250	254	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	188	first strand
Strand 2	C	278	279	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	322	328	first strand
Strand 2	C	342	350	anti-parallel
Strand 3	C	415	420	anti-parallel
Strand 4	C	383	388	anti-parallel
Strand 5	C	372	376	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	335	337	first strand
Strand 2	C	425	427	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	399	402	first strand
Strand 2	C	405	411	anti-parallel
Strand 3	C	355	360	anti-parallel
Strand 4	C	431	440	anti-parallel
Strand 5	C	456	463	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Y9H

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y9H