Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y9I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y9I entry

There is 1 chain in PDB entry 5Y9I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 11LEU 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5Y9I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 39Right-handed alpha
Helix 2
AA2
A
53 60Right-handed 310
Helix 3
AA3
A
61 65Right-handed 310
Helix 4
AA4
A
86 112Right-handed alpha
Helix 5
AA5
A
113 119Right-handed 310
Helix 6
AA6
A
130 134Right-handed 310
Helix 7
AA7
A
181 190Right-handed alpha
Helix 8
AA8
A
191 193Right-handed 310
Helix 9
AA9
A
199 207Right-handed alpha
Helix 10
AB1
A
215 231Right-handed alpha
Helix 11
AB2
A
231 238Right-handed alpha
Helix 12
AB3
A
276 280Right-handed 310
Helix 13
AB4
A
282 285Right-handed 310
Helix 14
AB5
A
286 296Right-handed alpha
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There are 2 sheets in PDB entry 5Y9I. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 15first strand
Strand 2
A
42 45parallel
Strand 3
A
250 254anti-parallel
Strand 4
A
159 166anti-parallel
Strand 5
A
268 275anti-parallel
Strand 6
A
120 127anti-parallel
Strand 7
A
71 74anti-parallel
Strand 8
A
79 81anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 245first strand
Strand 2
A
174 178anti-parallel
Strand 3
A
260 264anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il