Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y9N

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Y9N entry

There are 10 chains in PDB entry 5Y9N (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 5	LEU 242
B	LYS 5	LEU 242
C	LYS 5	LEU 242
D	LYS 5	LEU 242
E	LYS 5	LEU 242
F	LYS 5	LEU 242
G	LYS 5	LEU 242
H	LYS 5	LEU 242
I	LYS 5	LEU 242
J	LYS 5	LEU 242

There are 70 helices in PDB entry 5Y9N. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	27	Right-handed 310
Helix 2	AA2	A	28	41	Right-handed alpha
Helix 3	AA3	A	87	105	Right-handed alpha
Helix 4	AA4	A	133	142	Right-handed alpha
Helix 5	AA5	A	155	167	Right-handed alpha
Helix 6	AA6	A	184	200	Right-handed alpha
Helix 7	AA7	A	205	242	Right-handed alpha
Helix 8	AA8	B	25	27	Right-handed 310
Helix 9	AA9	B	28	41	Right-handed alpha
Helix 10	AB1	B	87	105	Right-handed alpha
Helix 11	AB2	B	133	142	Right-handed alpha
Helix 12	AB3	B	155	167	Right-handed alpha
Helix 13	AB4	B	184	200	Right-handed alpha
Helix 14	AB5	B	205	242	Right-handed alpha
Helix 15	AB6	C	25	27	Right-handed 310
Helix 16	AB7	C	28	41	Right-handed alpha
Helix 17	AB8	C	87	105	Right-handed alpha
Helix 18	AB9	C	133	142	Right-handed alpha
Helix 19	AC1	C	155	167	Right-handed alpha
Helix 20	AC2	C	184	200	Right-handed alpha
Helix 21	AC3	C	205	242	Right-handed alpha
Helix 22	AC4	D	25	27	Right-handed 310
Helix 23	AC5	D	28	41	Right-handed alpha
Helix 24	AC6	D	87	105	Right-handed alpha
Helix 25	AC7	D	133	142	Right-handed alpha
Helix 26	AC8	D	155	167	Right-handed alpha
Helix 27	AC9	D	184	200	Right-handed alpha
Helix 28	AD1	D	205	242	Right-handed alpha
Helix 29	AD2	E	25	27	Right-handed 310
Helix 30	AD3	E	28	41	Right-handed alpha
Helix 31	AD4	E	87	105	Right-handed alpha
Helix 32	AD5	E	133	142	Right-handed alpha
Helix 33	AD6	E	155	167	Right-handed alpha
Helix 34	AD7	E	184	200	Right-handed alpha
Helix 35	AD8	E	205	242	Right-handed alpha
Helix 36	AD9	F	25	27	Right-handed 310
Helix 37	AE1	F	28	41	Right-handed alpha
Helix 38	AE2	F	87	105	Right-handed alpha
Helix 39	AE3	F	133	142	Right-handed alpha
Helix 40	AE4	F	155	167	Right-handed alpha
Helix 41	AE5	F	184	200	Right-handed alpha
Helix 42	AE6	F	205	242	Right-handed alpha
Helix 43	AE7	G	25	27	Right-handed 310
Helix 44	AE8	G	28	41	Right-handed alpha
Helix 45	AE9	G	87	105	Right-handed alpha
Helix 46	AF1	G	133	142	Right-handed alpha
Helix 47	AF2	G	155	167	Right-handed alpha
Helix 48	AF3	G	184	200	Right-handed alpha
Helix 49	AF4	G	205	242	Right-handed alpha
Helix 50	AF5	H	25	27	Right-handed 310
Helix 51	AF6	H	28	41	Right-handed alpha
Helix 52	AF7	H	87	105	Right-handed alpha
Helix 53	AF8	H	133	142	Right-handed alpha
Helix 54	AF9	H	155	167	Right-handed alpha
Helix 55	AG1	H	184	200	Right-handed alpha
Helix 56	AG2	H	205	242	Right-handed alpha
Helix 57	AG3	I	25	27	Right-handed 310
Helix 58	AG4	I	28	41	Right-handed alpha
Helix 59	AG5	I	87	105	Right-handed alpha
Helix 60	AG6	I	133	142	Right-handed alpha
Helix 61	AG7	I	155	167	Right-handed alpha
Helix 62	AG8	I	184	200	Right-handed alpha
Helix 63	AG9	I	205	242	Right-handed alpha
Helix 64	AH1	J	25	27	Right-handed 310
Helix 65	AH2	J	28	41	Right-handed alpha
Helix 66	AH3	J	87	105	Right-handed alpha
Helix 67	AH4	J	133	142	Right-handed alpha
Helix 68	AH5	J	155	167	Right-handed alpha
Helix 69	AH6	J	184	200	Right-handed alpha
Helix 70	AH7	J	205	242	Right-handed alpha

There are 20 sheets in PDB entry 5Y9N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	10	first strand
Strand 2	A	44	50	anti-parallel
Strand 3	A	69	74	anti-parallel
Strand 4	A	77	82	anti-parallel
Strand 5	A	18	22	parallel
Strand 6	A	109	117	parallel
Strand 7	A	171	178	parallel
Strand 8	A	127	131	anti-parallel
Strand 9	A	146	147	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	66	first strand
Strand 2	A	57	61	anti-parallel
Strand 3	B	151	154	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	154	first strand
Strand 2	E	57	61	anti-parallel
Strand 3	E	64	66	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	10	first strand
Strand 2	B	44	50	anti-parallel
Strand 3	B	69	74	anti-parallel
Strand 4	B	77	82	anti-parallel
Strand 5	B	18	22	parallel
Strand 6	B	109	117	parallel
Strand 7	B	171	178	parallel
Strand 8	B	127	131	anti-parallel
Strand 9	B	146	147	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	66	first strand
Strand 2	B	57	61	anti-parallel
Strand 3	C	150	154	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	10	first strand
Strand 2	C	44	50	anti-parallel
Strand 3	C	69	74	anti-parallel
Strand 4	C	77	82	anti-parallel
Strand 5	C	18	22	parallel
Strand 6	C	109	117	parallel
Strand 7	C	171	178	parallel
Strand 8	C	127	131	anti-parallel
Strand 9	C	146	147	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	66	first strand
Strand 2	C	57	61	anti-parallel
Strand 3	D	151	154	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	10	first strand
Strand 2	D	44	50	anti-parallel
Strand 3	D	69	74	anti-parallel
Strand 4	D	77	82	anti-parallel
Strand 5	D	18	22	parallel
Strand 6	D	109	117	parallel
Strand 7	D	171	178	parallel
Strand 8	D	127	131	anti-parallel
Strand 9	D	146	147	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	66	first strand
Strand 2	D	57	61	anti-parallel
Strand 3	E	150	154	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	10	first strand
Strand 2	E	44	50	anti-parallel
Strand 3	E	69	74	anti-parallel
Strand 4	E	77	82	anti-parallel
Strand 5	E	18	22	parallel
Strand 6	E	109	117	parallel
Strand 7	E	171	178	parallel
Strand 8	E	127	131	anti-parallel
Strand 9	E	146	147	parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	8	10	first strand
Strand 2	F	44	50	anti-parallel
Strand 3	F	69	74	anti-parallel
Strand 4	F	77	82	anti-parallel
Strand 5	F	18	22	parallel
Strand 6	F	109	117	parallel
Strand 7	F	171	178	parallel
Strand 8	F	127	131	anti-parallel
Strand 9	F	146	147	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	64	66	first strand
Strand 2	F	57	61	anti-parallel
Strand 3	G	151	154	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	151	154	first strand
Strand 2	J	57	61	anti-parallel
Strand 3	J	64	66	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	8	10	first strand
Strand 2	G	44	50	anti-parallel
Strand 3	G	69	74	anti-parallel
Strand 4	G	77	82	anti-parallel
Strand 5	G	18	22	parallel
Strand 6	G	109	117	parallel
Strand 7	G	171	178	parallel
Strand 8	G	127	131	anti-parallel
Strand 9	G	146	147	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	64	66	first strand
Strand 2	G	57	61	anti-parallel
Strand 3	H	150	154	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	8	10	first strand
Strand 2	H	44	50	anti-parallel
Strand 3	H	69	74	anti-parallel
Strand 4	H	77	82	anti-parallel
Strand 5	H	18	22	parallel
Strand 6	H	109	117	parallel
Strand 7	H	171	178	parallel
Strand 8	H	127	131	anti-parallel
Strand 9	H	146	147	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	64	66	first strand
Strand 2	H	57	61	anti-parallel
Strand 3	I	151	154	anti-parallel

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There are 9 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	8	10	first strand
Strand 2	I	44	50	anti-parallel
Strand 3	I	69	74	anti-parallel
Strand 4	I	77	82	anti-parallel
Strand 5	I	18	22	parallel
Strand 6	I	109	117	parallel
Strand 7	I	171	178	parallel
Strand 8	I	127	131	anti-parallel
Strand 9	I	146	147	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	64	66	first strand
Strand 2	I	57	61	anti-parallel
Strand 3	J	150	154	anti-parallel

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There are 9 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	8	10	first strand
Strand 2	J	44	50	anti-parallel
Strand 3	J	69	74	anti-parallel
Strand 4	J	77	82	anti-parallel
Strand 5	J	18	22	parallel
Strand 6	J	109	117	parallel
Strand 7	J	171	178	parallel
Strand 8	J	127	131	anti-parallel
Strand 9	J	146	147	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Y9N

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y9N