Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y9Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y9Q entry

There are 2 chains in PDB entry 5Y9Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1PRO 196
B
 GLY 1PRO 196
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5Y9Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 15Right-handed alpha
Helix 2
AA2
A
15 27Right-handed alpha
Helix 3
AA3
A
38 45Right-handed alpha
Helix 4
AA4
A
46 49Right-handed 310
Helix 5
AA5
A
83 87Right-handed 310
Helix 6
AA6
A
95 110Right-handed alpha
Helix 7
AA7
A
122 132Right-handed alpha
Helix 8
AA8
A
142 144Right-handed 310
Helix 9
AA9
A
173 178Right-handed 310
Helix 10
AB1
A
179 193Right-handed alpha
Helix 11
AB2
B
8 15Right-handed alpha
Helix 12
AB3
B
15 27Right-handed alpha
Helix 13
AB4
B
38 45Right-handed alpha
Helix 14
AB5
B
46 49Right-handed 310
Helix 15
AB6
B
82 87Right-handed 310
Helix 16
AB7
B
95 110Right-handed alpha
Helix 17
AB8
B
122 132Right-handed alpha
Helix 18
AB9
B
142 144Right-handed 310
Helix 19
AC1
B
173 178Right-handed 310
Helix 20
AC2
B
179 193Right-handed alpha
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There are 4 sheets in PDB entry 5Y9Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 156first strand
Strand 2
A
63 77anti-parallel
Strand 3
A
136 140anti-parallel
Strand 4
A
89 92parallel
Strand 5
A
116 120parallel
Strand 6
B
31 36parallel
Strand 7
B
2 7parallel
Strand 8
B
51 55parallel
Strand 9
B
165 172anti-parallel
Strand 10
B
63 77anti-parallel
Strand 11
B
152 156anti-parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 156first strand
Strand 2
A
63 77anti-parallel
Strand 3
A
165 172anti-parallel
Strand 4
A
51 55anti-parallel
Strand 5
A
2 7parallel
Strand 6
A
31 36parallel
Strand 7
B
116 120parallel
Strand 8
B
89 92parallel
Strand 9
B
136 140parallel
Strand 10
B
63 77anti-parallel
Strand 11
B
152 156anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 159first strand
Strand 2
A
162 163anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 159first strand
Strand 2
B
162 163anti-parallel
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