Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y9V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y9V entry

There are 2 chains in PDB entry 5Y9V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 14GLY 202
B
 VAL 14TYR 201
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 5Y9V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 63Right-handed 310
Helix 2
AA2
A
72 80Right-handed alpha
Helix 3
AA3
B
60 62Right-handed 310
Helix 4
AA4
B
72 80Right-handed alpha
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There are 4 sheets in PDB entry 5Y9V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 50first strand
Strand 2
A
32 38anti-parallel
Strand 3
A
22 29anti-parallel
Strand 4
A
196 200anti-parallel
Strand 5
A
164 169anti-parallel
Strand 6
A
143 148anti-parallel
Strand 7
A
103 108anti-parallel
Strand 8
A
65 71anti-parallel
Strand 9
A
22 29anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 117first strand
Strand 2
A
129 134anti-parallel
Strand 3
A
185 190anti-parallel
Strand 4
A
175 180anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 50first strand
Strand 2
B
32 37anti-parallel
Strand 3
B
22 29anti-parallel
Strand 4
B
196 200anti-parallel
Strand 5
B
164 169anti-parallel
Strand 6
B
143 148anti-parallel
Strand 7
B
103 108anti-parallel
Strand 8
B
64 71anti-parallel
Strand 9
B
22 29anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 117first strand
Strand 2
B
129 134anti-parallel
Strand 3
B
185 190anti-parallel
Strand 4
B
175 180anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il