Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y9W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y9W entry

There are 3 chains in PDB entry 5Y9W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 TYR 27LEU 242
C
 GLY 14ILE 50
A
 TYR 27ASN 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5Y9W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
27 29Right-handed 310
Helix 2
AA2
B
30 41Right-handed alpha
Helix 3
AA3
B
56 60Right-handed 310
Helix 4
AA4
B
69 71Right-handed 310
Helix 5
AA5
B
91 95Right-handed 310
Helix 6
AA6
B
114 118Right-handed 310
Helix 7
AA7
B
161 167Right-handed 310
Helix 8
AA8
B
185 191Right-handed 310
Helix 9
AA9
B
209 214Right-handed alpha
Helix 10
AB1
C
15 29Right-handed alpha
Helix 11
AB2
A
27 29Right-handed 310
Helix 12
AB3
A
30 41Right-handed alpha
Helix 13
AB4
A
91 95Right-handed 310
Helix 14
AB5
A
114 118Right-handed 310
Helix 15
AB6
A
161 167Right-handed 310
Helix 16
AB7
A
185 191Right-handed 310
Helix 17
AB8
A
209 214Right-handed alpha
Helix 18
AB9
A
225 229Right-handed 310
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There are 5 sheets in PDB entry 5Y9W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 68first strand
Strand 2
B
72 77anti-parallel
Strand 3
B
100 102parallel
Strand 4
B
123 125parallel
Strand 5
B
148 150parallel
Strand 6
B
172 174parallel
Strand 7
B
196 198parallel
Strand 8
B
219 221parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 85first strand
Strand 2
B
107 110parallel
Strand 3
B
130 133parallel
Strand 4
B
155 158parallel
Strand 5
B
179 183parallel
Strand 6
B
203 207parallel
Strand 7
B
228 229parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 37first strand
Strand 2
C
42 45anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 43first strand
Strand 2
A
83 85anti-parallel
Strand 3
A
107 110parallel
Strand 4
A
130 134parallel
Strand 5
A
155 157parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 68first strand
Strand 2
A
72 77anti-parallel
Strand 3
A
100 102parallel
Strand 4
A
123 125parallel
Strand 5
A
148 150parallel
Strand 6
A
172 174parallel
Strand 7
A
196 198parallel
Strand 8
A
219 221parallel
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