Analysis of interatomic Contacts of Structural Units in PDB entry:
5YA5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YA5 entry

There is 1 chain in PDB entry 5YA5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1057ILE 1345
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5YA5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1059 1066Right-handed alpha
Helix 2
AA2
A
1072 1074Right-handed 310
Helix 3
AA3
A
1123 1128Right-handed alpha
Helix 4
AA4
A
1129 1131Right-handed 310
Helix 5
AA5
A
1164 1171Right-handed alpha
Helix 6
AA6
A
1177 1198Right-handed alpha
Helix 7
AA7
A
1206 1208Right-handed 310
Helix 8
AA8
A
1223 1227Right-handed 310
Helix 9
AA9
A
1231 1235Right-handed 310
Helix 10
AB1
A
1246 1250Right-handed 310
Helix 11
AB2
A
1251 1258Right-handed alpha
Helix 12
AB3
A
1261 1278Right-handed alpha
Helix 13
AB4
A
1288 1290Right-handed 310
Helix 14
AB5
A
1291 1298Right-handed alpha
Helix 15
AB6
A
1309 1320Right-handed alpha
Helix 16
AB7
A
1323 1327Right-handed 310
Helix 17
AB8
A
1329 1343Right-handed alpha
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There are 3 sheets in PDB entry 5YA5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1076 1086first strand
Strand 2
A
1090 1097anti-parallel
Strand 3
A
1105 1112anti-parallel
Strand 4
A
1154 1158anti-parallel
Strand 5
A
1144 1146anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1210 1212first strand
Strand 2
A
1218 1220anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1236 1237first strand
Strand 2
A
1244 1245anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il