Analysis of interatomic Contacts of Structural Units in PDB entry:
5YAC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YAC entry

There is 1 chain in PDB entry 5YAC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5YAC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 23Right-handed alpha
Helix 2
AA2
A
72 80Right-handed alpha
Helix 3
AA3
A
99 101Right-handed 310
Helix 4
AA4
A
102 114Right-handed alpha
Helix 5
AA5
A
166 168Right-handed 310
Helix 6
AA6
A
169 180Right-handed alpha
Helix 7
AA7
A
194 202Right-handed alpha
Helix 8
AA8
A
213 227Right-handed alpha
Helix 9
AA9
A
238 242Right-handed 310
Helix 10
AB1
A
256 267Right-handed alpha
Helix 11
AB2
A
286 301Right-handed alpha
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There are 4 sheets in PDB entry 5YAC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
37 41anti-parallel
Strand 3
A
2 8anti-parallel
Strand 4
A
51 54anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 87first strand
Strand 2
A
90 93anti-parallel
Strand 3
A
119 127parallel
Strand 4
A
132 141anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 150first strand
Strand 2
A
155 159anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 236first strand
Strand 2
A
204 211parallel
Strand 3
A
184 188parallel
Strand 4
A
246 251parallel
Strand 5
A
268 280parallel
Strand 6
A
320 329anti-parallel
Strand 7
A
303 314anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il