Analysis of interatomic Contacts of Structural Units in PDB entry:
5YAG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YAG entry

There are 2 chains in PDB entry 5YAG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 217
B
 GLU 5LEU 217
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 5YAG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 5Right-handed 310
Helix 2
AA2
A
13 15Right-handed 310
Helix 3
AA3
A
16 28Right-handed alpha
Helix 4
AA4
A
32 38Right-handed alpha
Helix 5
AA5
A
45 54Right-handed alpha
Helix 6
AA6
A
84 96Right-handed alpha
Helix 7
AA7
A
98 116Right-handed alpha
Helix 8
AA8
A
116 122Right-handed alpha
Helix 9
AA9
A
136 139Right-handed 310
Helix 10
AB1
A
142 158Right-handed alpha
Helix 11
AB2
A
169 179Right-handed alpha
Helix 12
AB3
A
190 192Right-handed 310
Helix 13
AB4
A
204 207Right-handed 310
Helix 14
AB5
B
13 15Right-handed 310
Helix 15
AB6
B
16 28Right-handed alpha
Helix 16
AB7
B
32 37Right-handed alpha
Helix 17
AB8
B
45 54Right-handed alpha
Helix 18
AB9
B
84 94Right-handed alpha
Helix 19
AC1
B
98 116Right-handed alpha
Helix 20
AC2
B
116 122Right-handed alpha
Helix 21
AC3
B
142 159Right-handed alpha
Helix 22
AC4
B
169 179Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5YAG. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 11first strand
Strand 2
A
61 66anti-parallel
Strand 3
A
71 81anti-parallel
Strand 4
A
126 134anti-parallel
Strand 5
A
162 167parallel
Strand 6
A
209 216anti-parallel
Strand 7
A
182 188anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 11first strand
Strand 2
B
61 66anti-parallel
Strand 3
B
71 81anti-parallel
Strand 4
B
126 134anti-parallel
Strand 5
B
162 167parallel
Strand 6
B
209 216anti-parallel
Strand 7
B
182 188anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il