Analysis of interatomic Contacts of Structural Units in PDB entry:
5YAT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YAT entry

There are 2 chains in PDB entry 5YAT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 4LYS 350
B
 THR 4LYS 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 5YAT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 55Right-handed alpha
Helix 2
AA2
A
103 108Right-handed alpha
Helix 3
AA3
A
110 114Right-handed 310
Helix 4
AA4
A
147 152Right-handed alpha
Helix 5
AA5
A
153 155Right-handed 310
Helix 6
AA6
A
156 169Right-handed alpha
Helix 7
AA7
A
183 196Right-handed alpha
Helix 8
AA8
A
206 216Right-handed alpha
Helix 9
AA9
A
229 238Right-handed alpha
Helix 10
AB1
A
251 262Right-handed alpha
Helix 11
AB2
A
282 289Right-handed alpha
Helix 12
AB3
A
300 313Right-handed alpha
Helix 13
AB4
A
327 337Right-handed alpha
Helix 14
AB5
B
46 55Right-handed alpha
Helix 15
AB6
B
105 109Right-handed 310
Helix 16
AB7
B
110 114Right-handed 310
Helix 17
AB8
B
147 152Right-handed alpha
Helix 18
AB9
B
153 155Right-handed 310
Helix 19
AC1
B
156 169Right-handed alpha
Helix 20
AC2
B
183 196Right-handed alpha
Helix 21
AC3
B
206 216Right-handed alpha
Helix 22
AC4
B
229 238Right-handed alpha
Helix 23
AC5
B
251 262Right-handed alpha
Helix 24
AC6
B
282 289Right-handed alpha
Helix 25
AC7
B
300 313Right-handed alpha
Helix 26
AC8
B
327 337Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 5YAT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 27first strand
Strand 2
A
8 14anti-parallel
Strand 3
A
65 66anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 135first strand
Strand 2
A
35 44anti-parallel
Strand 3
A
71 78anti-parallel
Strand 4
A
90 93anti-parallel
Strand 5
A
140 142anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 135first strand
Strand 2
A
35 44anti-parallel
Strand 3
A
344 347anti-parallel
Strand 4
A
321 324parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 98first strand
Strand 2
A
118 119anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 223first strand
Strand 2
A
199 204parallel
Strand 3
A
175 179parallel
Strand 4
A
244 247parallel
Strand 5
A
267 271parallel
Strand 6
A
292 296parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 27first strand
Strand 2
B
8 14anti-parallel
Strand 3
B
65 66anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 135first strand
Strand 2
B
35 44anti-parallel
Strand 3
B
71 78anti-parallel
Strand 4
B
90 93anti-parallel
Strand 5
B
140 142anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 135first strand
Strand 2
B
35 44anti-parallel
Strand 3
B
344 347anti-parallel
Strand 4
B
321 324parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 98first strand
Strand 2
B
118 119anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
220 223first strand
Strand 2
B
199 204parallel
Strand 3
B
175 179parallel
Strand 4
B
244 247parallel
Strand 5
B
267 271parallel
Strand 6
B
292 296parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il