Analysis of interatomic Contacts of Structural Units in PDB entry:
5YAY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YAY entry

There are 2 chains in PDB entry 5YAY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 1090ASN 1333
B
 LYS 1154ALA 1168
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5YAY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1094 1108Right-handed alpha
Helix 2
AA2
A
1110 1115Right-handed alpha
Helix 3
AA3
A
1116 1135Right-handed alpha
Helix 4
AA4
A
1140 1155Right-handed alpha
Helix 5
AA5
A
1155 1164Right-handed alpha
Helix 6
AA6
A
1172 1180Right-handed alpha
Helix 7
AA7
A
1182 1192Right-handed alpha
Helix 8
AA8
A
1206 1214Right-handed alpha
Helix 9
AA9
A
1218 1232Right-handed alpha
Helix 10
AB1
A
1244 1252Right-handed alpha
Helix 11
AB2
A
1254 1264Right-handed alpha
Helix 12
AB3
A
1277 1286Right-handed alpha
Helix 13
AB4
A
1287 1296Right-handed alpha
Helix 14
AB5
A
1311 1319Right-handed alpha
Helix 15
AB6
A
1321 1333Right-handed alpha
Helix 16
AB7
B
1154 1158Right-handed 310
Helix 17
AB8
B
1161 1167Right-handed alpha
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There are no sheets in PDB entry 5YAY
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il