Analysis of interatomic Contacts of Structural Units in PDB entry:
5YB2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YB2 entry

There are 14 chains in PDB entry 5YB2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 SER 1LEU 36
D
 SER 1LEU 36
F
 GLY 2LEU 36
H
 GLU 47LYS 69
G
 GLU 47LYS 69
I
 GLU 47LYS 69
B
 SER 1LEU 36
A
 SER 1LEU 36
C
 GLY 2LEU 36
K
 GLU 47LYS 69
J
 GLU 47LYS 69
L
 GLU 47LYS 69
M
 SER 1LEU 36
P
 GLU 47LYS 69
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5YB2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
2 34Right-handed alpha
Helix 2
AA2
D
2 36Right-handed alpha
Helix 3
AA3
F
3 34Right-handed alpha
Helix 4
AA4
H
49 68Right-handed alpha
Helix 5
AA5
G
49 68Right-handed alpha
Helix 6
AA6
I
49 68Right-handed alpha
Helix 7
AA7
B
2 34Right-handed alpha
Helix 8
AA8
A
2 34Right-handed alpha
Helix 9
AA9
C
3 34Right-handed alpha
Helix 10
AB1
K
49 68Right-handed alpha
Helix 11
AB2
J
49 69Right-handed alpha
Helix 12
AB3
L
49 69Right-handed alpha
Helix 13
AB4
M
2 34Right-handed alpha
Helix 14
AB5
P
49 69Right-handed alpha
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There are no sheets in PDB entry 5YB2
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il