Analysis of interatomic Contacts of Structural Units in PDB entry:
5YB4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YB4 entry

There are 6 chains in PDB entry 5YB4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 SER 35LEU 70
D
 SER 35LEU 70
F
 GLY 36LEU 70
H
 LEU 115LYS 136
G
 THR 116LYS 136
I
 GLU 114LYS 136
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5YB4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
36 70Right-handed alpha
Helix 2
AA2
D
36 70Right-handed alpha
Helix 3
AA3
F
37 70Right-handed alpha
Helix 4
AA4
H
116 135Right-handed alpha
Helix 5
AA5
G
117 135Right-handed alpha
Helix 6
AA6
I
116 136Right-handed alpha
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There are no sheets in PDB entry 5YB4
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il