Analysis of interatomic Contacts of Structural Units in PDB entry:
5YB9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YB9 entry

There is 1 chain in PDB entry 5YB9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1MET 172
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 5YB9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 43Right-handed alpha
Helix 2
AA2
A
127 131Right-handed 310
Helix 3
AA3
A
143 152Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5YB9.

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
164 171anti-parallel
Strand 3
A
6 13anti-parallel
Strand 4
A
16 25anti-parallel
Strand 5
A
136 142anti-parallel
Strand 6
A
105 108anti-parallel
Strand 7
A
120 123anti-parallel
Strand 8
A
69 72anti-parallel
Strand 9
A
63 65anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il