Analysis of interatomic Contacts of Structural Units in PDB entry:
5YBE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YBE entry

There are 2 chains in PDB entry 5YBE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1081PHE 1334
B
 PRO 1138ASP 1156
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5YBE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1081 1085Right-handed 310
Helix 2
AA2
A
1094 1108Right-handed alpha
Helix 3
AA3
A
1110 1115Right-handed alpha
Helix 4
AA4
A
1116 1135Right-handed alpha
Helix 5
AA5
A
1140 1155Right-handed alpha
Helix 6
AA6
A
1155 1164Right-handed alpha
Helix 7
AA7
A
1172 1180Right-handed alpha
Helix 8
AA8
A
1182 1192Right-handed alpha
Helix 9
AA9
A
1206 1212Right-handed alpha
Helix 10
AB1
A
1218 1231Right-handed alpha
Helix 11
AB2
A
1244 1252Right-handed alpha
Helix 12
AB3
A
1254 1264Right-handed alpha
Helix 13
AB4
A
1277 1286Right-handed alpha
Helix 14
AB5
A
1287 1296Right-handed alpha
Helix 15
AB6
A
1311 1319Right-handed alpha
Helix 16
AB7
A
1321 1334Right-handed alpha
Helix 17
AB8
B
1141 1145Right-handed 310
Helix 18
AB9
B
1148 1154Right-handed alpha
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There are no sheets in PDB entry 5YBE
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