Analysis of interatomic Contacts of Structural Units in PDB entry:
5YBI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YBI entry

There are 2 chains in PDB entry 5YBI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -3ARG 430
B
 HIS 4ARG 430
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5YBI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
88 92Right-handed 310
Helix 2
AA2
A
125 129Right-handed 310
Helix 3
AA3
A
140 147Right-handed alpha
Helix 4
AA4
A
164 175Right-handed alpha
Helix 5
AA5
A
189 202Right-handed alpha
Helix 6
AA6
A
203 207Right-handed 310
Helix 7
AA7
A
219 240Right-handed alpha
Helix 8
AA8
A
250 265Right-handed alpha
Helix 9
AA9
A
275 287Right-handed alpha
Helix 10
AB1
A
313 323Right-handed alpha
Helix 11
AB2
A
330 336Right-handed alpha
Helix 12
AB3
A
343 347Right-handed 310
Helix 13
AB4
A
351 356Right-handed alpha
Helix 14
AB5
A
357 378Right-handed alpha
Helix 15
AB6
A
394 400Right-handed alpha
Helix 16
AB7
A
400 409Right-handed alpha
Helix 17
AB8
A
417 429Right-handed alpha
Helix 18
AB9
B
88 92Right-handed 310
Helix 19
AC1
B
125 129Right-handed 310
Helix 20
AC2
B
140 147Right-handed alpha
Helix 21
AC3
B
164 176Right-handed alpha
Helix 22
AC4
B
189 202Right-handed alpha
Helix 23
AC5
B
205 207Right-handed 310
Helix 24
AC6
B
219 240Right-handed alpha
Helix 25
AC7
B
250 265Right-handed alpha
Helix 26
AC8
B
275 287Right-handed alpha
Helix 27
AC9
B
314 323Right-handed alpha
Helix 28
AD1
B
330 336Right-handed alpha
Helix 29
AD2
B
343 347Right-handed 310
Helix 30
AD3
B
351 356Right-handed alpha
Helix 31
AD4
B
357 379Right-handed alpha
Helix 32
AD5
B
391 409Right-handed alpha
Helix 33
AD6
B
417 430Right-handed alpha
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There are 8 sheets in PDB entry 5YBI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 87first strand
Strand 2
A
115 118anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 105first strand
Strand 2
A
94 96anti-parallel
Strand 3
A
209 215parallel
Strand 4
A
180 188parallel
Strand 5
A
243 249parallel
Strand 6
A
297 305parallel
Strand 7
A
290 291anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 105first strand
Strand 2
A
94 96anti-parallel
Strand 3
A
209 215parallel
Strand 4
A
180 188parallel
Strand 5
A
243 249parallel
Strand 6
A
297 305parallel
Strand 7
A
154 159parallel
Strand 8
A
325 328parallel
Strand 9
A
348 349anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 136first strand
Strand 2
A
149 150anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 87first strand
Strand 2
B
115 118anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 105first strand
Strand 2
B
94 96anti-parallel
Strand 3
B
209 215parallel
Strand 4
B
180 188parallel
Strand 5
B
243 249parallel
Strand 6
B
297 305parallel
Strand 7
B
290 291anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 105first strand
Strand 2
B
94 96anti-parallel
Strand 3
B
209 215parallel
Strand 4
B
180 188parallel
Strand 5
B
243 249parallel
Strand 6
B
297 305parallel
Strand 7
B
154 159parallel
Strand 8
B
325 328parallel
Strand 9
B
348 349anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 136first strand
Strand 2
B
149 150anti-parallel
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