Analysis of interatomic Contacts of Structural Units in PDB entry:
5YBV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YBV entry

There are 4 chains in PDB entry 5YBV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 588ILE 831
B
 MET 588ASN 830
C
 LYS 1152ALA 1166
D
 LYS 1152ALA 1166
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 5YBV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
591 607Right-handed alpha
Helix 2
AA2
A
608 611Right-handed 310
Helix 3
AA3
A
612 632Right-handed alpha
Helix 4
AA4
A
637 652Right-handed alpha
Helix 5
AA5
A
652 661Right-handed alpha
Helix 6
AA6
A
669 677Right-handed alpha
Helix 7
AA7
A
679 689Right-handed alpha
Helix 8
AA8
A
703 708Right-handed alpha
Helix 9
AA9
A
709 711Right-handed 310
Helix 10
AB1
A
715 728Right-handed alpha
Helix 11
AB2
A
741 749Right-handed alpha
Helix 12
AB3
A
751 761Right-handed alpha
Helix 13
AB4
A
774 783Right-handed alpha
Helix 14
AB5
A
784 793Right-handed alpha
Helix 15
AB6
A
808 816Right-handed alpha
Helix 16
AB7
A
818 829Right-handed alpha
Helix 17
AB8
B
591 607Right-handed alpha
Helix 18
AB9
B
608 611Right-handed 310
Helix 19
AC1
B
612 632Right-handed alpha
Helix 20
AC2
B
637 650Right-handed alpha
Helix 21
AC3
B
652 661Right-handed alpha
Helix 22
AC4
B
669 677Right-handed alpha
Helix 23
AC5
B
679 689Right-handed alpha
Helix 24
AC6
B
703 708Right-handed alpha
Helix 25
AC7
B
709 711Right-handed 310
Helix 26
AC8
B
715 729Right-handed alpha
Helix 27
AC9
B
741 749Right-handed alpha
Helix 28
AD1
B
751 761Right-handed alpha
Helix 29
AD2
B
774 783Right-handed alpha
Helix 30
AD3
B
784 793Right-handed alpha
Helix 31
AD4
B
808 816Right-handed alpha
Helix 32
AD5
B
818 829Right-handed alpha
Helix 33
AD6
C
1152 1156Right-handed 310
Helix 34
AD7
C
1159 1165Right-handed alpha
Helix 35
AD8
D
1152 1156Right-handed 310
Helix 36
AD9
D
1159 1165Right-handed alpha
Back to top of page
There are no sheets in PDB entry 5YBV
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il