Analysis of interatomic Contacts of Structural Units in PDB entry:
5YC0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YC0 entry

There are 12 chains in PDB entry 5YC0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 27ARG 68
B
 THR 27LEU 70
C
 THR 27ILE 69
Q
 TRP 117LEU 152
W
 TRP 117LEU 152
P
 TRP 117LYS 154
D
 THR 27ARG 68
E
 THR 27ARG 68
F
 THR 27ILE 69
H
 GLU 119ASP 153
I
 TRP 117LEU 152
G
 TRP 117LYS 154
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5YC0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 68Right-handed alpha
Helix 2
AA2
B
28 70Right-handed alpha
Helix 3
AA3
C
28 69Right-handed alpha
Helix 4
AA4
Q
118 152Right-handed alpha
Helix 5
AA5
W
118 152Right-handed alpha
Helix 6
AA6
P
118 154Right-handed alpha
Helix 7
AA7
D
28 68Right-handed alpha
Helix 8
AA8
E
28 67Right-handed alpha
Helix 9
AA9
F
28 67Right-handed alpha
Helix 10
AB1
H
120 153Right-handed alpha
Helix 11
AB2
I
118 152Right-handed alpha
Helix 12
AB3
G
118 154Right-handed alpha
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There are no sheets in PDB entry 5YC0
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