Analysis of interatomic Contacts of Structural Units in PDB entry:
5YCR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YCR entry

There are 4 chains in PDB entry 5YCR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 256
B
 MET 1GLY 256
C
 MET 1GLY 256
D
 MET 1GLY 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 5YCR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 31Right-handed alpha
Helix 2
AA2
A
41 54Right-handed alpha
Helix 3
AA3
A
69 85Right-handed alpha
Helix 4
AA4
A
98 104Right-handed alpha
Helix 5
AA5
A
105 109Right-handed 310
Helix 6
AA6
A
110 122Right-handed alpha
Helix 7
AA7
A
122 133Right-handed alpha
Helix 8
AA8
A
147 151Right-handed 310
Helix 9
AA9
A
157 179Right-handed alpha
Helix 10
AB1
A
204 215Right-handed alpha
Helix 11
AB2
A
222 235Right-handed alpha
Helix 12
AB3
A
236 239Right-handed 310
Helix 13
AB4
A
251 255Right-handed 310
Helix 14
AB5
B
19 31Right-handed alpha
Helix 15
AB6
B
41 54Right-handed alpha
Helix 16
AB7
B
69 85Right-handed alpha
Helix 17
AB8
B
98 104Right-handed alpha
Helix 18
AB9
B
105 109Right-handed 310
Helix 19
AC1
B
110 122Right-handed alpha
Helix 20
AC2
B
122 133Right-handed alpha
Helix 21
AC3
B
147 151Right-handed 310
Helix 22
AC4
B
157 179Right-handed alpha
Helix 23
AC5
B
204 215Right-handed alpha
Helix 24
AC6
B
222 235Right-handed alpha
Helix 25
AC7
B
236 239Right-handed 310
Helix 26
AC8
B
251 255Right-handed 310
Helix 27
AC9
C
19 31Right-handed alpha
Helix 28
AD1
C
41 43Right-handed 310
Helix 29
AD2
C
44 54Right-handed alpha
Helix 30
AD3
C
69 85Right-handed alpha
Helix 31
AD4
C
98 104Right-handed alpha
Helix 32
AD5
C
105 109Right-handed 310
Helix 33
AD6
C
110 122Right-handed alpha
Helix 34
AD7
C
122 136Right-handed alpha
Helix 35
AD8
C
147 151Right-handed 310
Helix 36
AD9
C
157 179Right-handed alpha
Helix 37
AE1
C
203 215Right-handed alpha
Helix 38
AE2
C
222 235Right-handed alpha
Helix 39
AE3
C
236 239Right-handed 310
Helix 40
AE4
C
251 255Right-handed 310
Helix 41
AE5
D
19 31Right-handed alpha
Helix 42
AE6
D
41 56Right-handed alpha
Helix 43
AE7
D
69 84Right-handed alpha
Helix 44
AE8
D
98 104Right-handed alpha
Helix 45
AE9
D
105 109Right-handed 310
Helix 46
AF1
D
110 122Right-handed alpha
Helix 47
AF2
D
122 133Right-handed alpha
Helix 48
AF3
D
147 151Right-handed 310
Helix 49
AF4
D
157 179Right-handed alpha
Helix 50
AF5
D
204 215Right-handed alpha
Helix 51
AF6
D
222 235Right-handed alpha
Helix 52
AF7
D
236 239Right-handed 310
Helix 53
AF8
D
251 255Right-handed 310
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There are 4 sheets in PDB entry 5YCR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
34 39parallel
Strand 3
A
8 12parallel
Strand 4
A
89 92parallel
Strand 5
A
140 146parallel
Strand 6
A
183 190parallel
Strand 7
A
245 248parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
34 39parallel
Strand 3
B
8 12parallel
Strand 4
B
89 92parallel
Strand 5
B
140 146parallel
Strand 6
B
183 190parallel
Strand 7
B
245 248parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 64first strand
Strand 2
C
34 39parallel
Strand 3
C
8 12parallel
Strand 4
C
89 92parallel
Strand 5
C
140 146parallel
Strand 6
C
183 190parallel
Strand 7
C
245 248parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
62 64first strand
Strand 2
D
34 39parallel
Strand 3
D
8 12parallel
Strand 4
D
89 92parallel
Strand 5
D
140 146parallel
Strand 6
D
183 190parallel
Strand 7
D
245 248parallel
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