Analysis of interatomic Contacts of Structural Units in PDB entry:
5YD2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YD2 entry

There are 2 chains in PDB entry 5YD2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 6HIS 354
B
 HIS 7HIS 352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 5YD2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 26Right-handed alpha
Helix 2
AA2
A
40 59Right-handed alpha
Helix 3
AA3
A
72 85Right-handed alpha
Helix 4
AA4
A
95 107Right-handed alpha
Helix 5
AA5
A
118 121Right-handed 310
Helix 6
AA6
A
174 178Right-handed 310
Helix 7
AA7
A
202 204Right-handed 310
Helix 8
AA8
A
212 215Right-handed 310
Helix 9
AA9
A
216 223Right-handed alpha
Helix 10
AB1
A
231 248Right-handed alpha
Helix 11
AB2
A
249 272Right-handed alpha
Helix 12
AB3
A
280 284Right-handed 310
Helix 13
AB4
A
295 299Right-handed 310
Helix 14
AB5
A
300 311Right-handed alpha
Helix 15
AB6
A
334 347Right-handed alpha
Helix 16
AB7
B
13 26Right-handed alpha
Helix 17
AB8
B
40 59Right-handed alpha
Helix 18
AB9
B
72 85Right-handed alpha
Helix 19
AC1
B
95 107Right-handed alpha
Helix 20
AC2
B
118 121Right-handed 310
Helix 21
AC3
B
174 178Right-handed 310
Helix 22
AC4
B
202 204Right-handed 310
Helix 23
AC5
B
212 215Right-handed 310
Helix 24
AC6
B
216 223Right-handed alpha
Helix 25
AC7
B
231 248Right-handed alpha
Helix 26
AC8
B
249 272Right-handed alpha
Helix 27
AC9
B
280 284Right-handed 310
Helix 28
AD1
B
295 299Right-handed 310
Helix 29
AD2
B
300 311Right-handed alpha
Helix 30
AD3
B
319 323Right-handed 310
Helix 31
AD4
B
334 352Right-handed alpha
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There are 6 sheets in PDB entry 5YD2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 70first strand
Strand 2
A
194 200anti-parallel
Strand 3
A
180 184anti-parallel
Strand 4
A
160 163parallel
Strand 5
A
137 140parallel
Strand 6
A
88 93parallel
Strand 7
A
110 116parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
148 149anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 277first strand
Strand 2
A
288 293anti-parallel
Strand 3
A
325 328anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 70first strand
Strand 2
B
194 200anti-parallel
Strand 3
B
180 184anti-parallel
Strand 4
B
160 163parallel
Strand 5
B
137 140parallel
Strand 6
B
88 93parallel
Strand 7
B
110 116parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 143first strand
Strand 2
B
148 149anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
275 277first strand
Strand 2
B
288 293anti-parallel
Strand 3
B
325 328anti-parallel
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