Analysis of interatomic Contacts of Structural Units in PDB entry:
5YD6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YD6 entry

There are 4 chains in PDB entry 5YD6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
VAL 362PHE 598
B
VAL 362PHE 598
C
PRO 360PHE 598
D
PRO 360PHE 598
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 5YD6. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
363 374Right-handed alpha
Helix 2
AA2
A
400 423Right-handed alpha
Helix 3
AA3
A
426 430Right-handed 310
Helix 4
AA4
A
431 455Right-handed alpha
Helix 5
AA5
A
456 459Right-handed 310
Helix 6
AA6
A
472 480Right-handed alpha
Helix 7
AA7
A
480 496Right-handed alpha
Helix 8
AA8
A
499 512Right-handed alpha
Helix 9
AA9
A
520 541Right-handed alpha
Helix 10
AB1
A
550 557Right-handed alpha
Helix 11
AB2
A
557 580Right-handed alpha
Helix 12
AB3
A
585 596Right-handed alpha
Helix 13
AB4
B
363 374Right-handed alpha
Helix 14
AB5
B
400 422Right-handed alpha
Helix 15
AB6
B
426 430Right-handed 310
Helix 16
AB7
B
431 455Right-handed alpha
Helix 17
AB8
B
456 459Right-handed 310
Helix 18
AB9
B
472 480Right-handed alpha
Helix 19
AC1
B
481 496Right-handed alpha
Helix 20
AC2
B
499 512Right-handed alpha
Helix 21
AC3
B
520 542Right-handed alpha
Helix 22
AC4
B
551 557Right-handed alpha
Helix 23
AC5
B
557 580Right-handed alpha
Helix 24
AC6
B
585 596Right-handed alpha
Helix 25
AC7
C
363 374Right-handed alpha
Helix 26
AC8
C
400 422Right-handed alpha
Helix 27
AC9
C
431 455Right-handed alpha
Helix 28
AD1
C
472 480Right-handed alpha
Helix 29
AD2
C
481 496Right-handed alpha
Helix 30
AD3
C
499 512Right-handed alpha
Helix 31
AD4
C
520 542Right-handed alpha
Helix 32
AD5
C
550 580Right-handed alpha
Helix 33
AD6
C
585 596Right-handed alpha
Helix 34
AD7
D
363 375Right-handed alpha
Helix 35
AD8
D
400 412Right-handed alpha
Helix 36
AD9
D
413 422Right-handed alpha
Helix 37
AE1
D
431 455Right-handed alpha
Helix 38
AE2
D
456 459Right-handed 310
Helix 39
AE3
D
475 480Right-handed alpha
Helix 40
AE4
D
481 495Right-handed alpha
Helix 41
AE5
D
499 512Right-handed alpha
Helix 42
AE6
D
520 542Right-handed alpha
Helix 43
AE7
D
550 557Right-handed alpha
Helix 44
AE8
D
557 580Right-handed alpha
Helix 45
AE9
D
585 596Right-handed alpha
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There are 4 sheets in PDB entry 5YD6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
461 463first strand
Strand 2
A
469 471anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
461 463first strand
Strand 2
B
469 471anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
461 463first strand
Strand 2
C
469 471anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
461 463first strand
Strand 2
D
469 471anti-parallel
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