Analysis of interatomic Contacts of Structural Units in PDB entry:
5YDD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YDD entry

There are 2 chains in PDB entry 5YDD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 126LEU 245
B
 MET 126HIS 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5YDD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
129 138Right-handed alpha
Helix 2
AA2
A
140 150Right-handed alpha
Helix 3
AA3
A
162 178Right-handed alpha
Helix 4
AA4
A
181 184Right-handed 310
Helix 5
AA5
A
185 204Right-handed alpha
Helix 6
AA6
A
205 210Right-handed 310
Helix 7
AA7
A
219 245Right-handed alpha
Helix 8
AA8
B
129 138Right-handed alpha
Helix 9
AA9
B
140 150Right-handed alpha
Helix 10
AB1
B
162 178Right-handed alpha
Helix 11
AB2
B
181 184Right-handed 310
Helix 12
AB3
B
185 204Right-handed alpha
Helix 13
AB4
B
205 210Right-handed 310
Helix 14
AB5
B
219 246Right-handed alpha
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There are no sheets in PDB entry 5YDD
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