Analysis of interatomic Contacts of Structural Units in PDB entry:
5YDG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YDG entry

There are 2 chains in PDB entry 5YDG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 79VAL 192
B
 PHE 79PRO 194
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5YDG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
100 117Right-handed alpha
Helix 2
AA2
A
118 125Right-handed alpha
Helix 3
AA3
A
142 152Right-handed alpha
Helix 4
AA4
A
165 169Right-handed 310
Helix 5
AA5
A
185 192Right-handed alpha
Helix 6
AA6
B
100 117Right-handed alpha
Helix 7
AA7
B
118 125Right-handed alpha
Helix 8
AA8
B
142 151Right-handed alpha
Helix 9
AA9
B
165 169Right-handed 310
Helix 10
AB1
B
185 193Right-handed alpha
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There are 2 sheets in PDB entry 5YDG. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 160first strand
Strand 2
A
86 91anti-parallel
Strand 3
A
135 140anti-parallel
Strand 4
A
126 131anti-parallel
Strand 5
A
174 177anti-parallel
Strand 6
A
180 182anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 160first strand
Strand 2
B
86 91anti-parallel
Strand 3
B
135 140anti-parallel
Strand 4
B
126 131anti-parallel
Strand 5
B
174 177anti-parallel
Strand 6
B
180 181anti-parallel
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