Analysis of interatomic Contacts of Structural Units in PDB entry:
5YDI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YDI entry

There are 3 chains in PDB entry 5YDI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 162SER 698
B
 ASP 162SER 698
C
 ASP 162SER 698
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 5YDI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
201 205Right-handed 310
Helix 2
AA2
A
239 244Right-handed alpha
Helix 3
AA3
A
292 301Right-handed alpha
Helix 4
AA4
A
311 317Right-handed alpha
Helix 5
AA5
A
327 344Right-handed alpha
Helix 6
AA6
A
345 347Right-handed 310
Helix 7
AA7
A
360 372Right-handed alpha
Helix 8
AA8
A
375 379Right-handed 310
Helix 9
AA9
A
397 413Right-handed alpha
Helix 10
AB1
A
420 431Right-handed alpha
Helix 11
AB2
A
432 439Right-handed alpha
Helix 12
AB3
A
463 471Right-handed alpha
Helix 13
AB4
A
487 494Right-handed alpha
Helix 14
AB5
A
508 520Right-handed alpha
Helix 15
AB6
A
527 535Right-handed alpha
Helix 16
AB7
A
543 560Right-handed alpha
Helix 17
AB8
A
560 573Right-handed alpha
Helix 18
AB9
A
593 597Right-handed 310
Helix 19
AC1
A
603 608Right-handed alpha
Helix 20
AC2
A
609 613Right-handed 310
Helix 21
AC3
A
619 640Right-handed alpha
Helix 22
AC4
A
679 688Right-handed alpha
Helix 23
AC5
A
688 697Right-handed alpha
Helix 24
AC6
B
201 205Right-handed 310
Helix 25
AC7
B
292 301Right-handed alpha
Helix 26
AC8
B
311 317Right-handed alpha
Helix 27
AC9
B
327 344Right-handed alpha
Helix 28
AD1
B
345 347Right-handed 310
Helix 29
AD2
B
360 372Right-handed alpha
Helix 30
AD3
B
397 413Right-handed alpha
Helix 31
AD4
B
421 431Right-handed alpha
Helix 32
AD5
B
432 439Right-handed alpha
Helix 33
AD6
B
463 471Right-handed alpha
Helix 34
AD7
B
487 494Right-handed alpha
Helix 35
AD8
B
508 520Right-handed alpha
Helix 36
AD9
B
525 535Right-handed alpha
Helix 37
AE1
B
543 560Right-handed alpha
Helix 38
AE2
B
560 574Right-handed alpha
Helix 39
AE3
B
593 597Right-handed 310
Helix 40
AE4
B
603 608Right-handed alpha
Helix 41
AE5
B
609 613Right-handed 310
Helix 42
AE6
B
619 640Right-handed alpha
Helix 43
AE7
B
679 688Right-handed alpha
Helix 44
AE8
B
688 698Right-handed alpha
Helix 45
AE9
C
201 205Right-handed 310
Helix 46
AF1
C
239 244Right-handed alpha
Helix 47
AF2
C
292 301Right-handed alpha
Helix 48
AF3
C
311 317Right-handed alpha
Helix 49
AF4
C
327 344Right-handed alpha
Helix 50
AF5
C
345 347Right-handed 310
Helix 51
AF6
C
360 372Right-handed alpha
Helix 52
AF7
C
375 379Right-handed 310
Helix 53
AF8
C
397 413Right-handed alpha
Helix 54
AF9
C
420 431Right-handed alpha
Helix 55
AG1
C
432 438Right-handed alpha
Helix 56
AG2
C
463 471Right-handed alpha
Helix 57
AG3
C
487 494Right-handed alpha
Helix 58
AG4
C
508 520Right-handed alpha
Helix 59
AG5
C
525 535Right-handed alpha
Helix 60
AG6
C
543 560Right-handed alpha
Helix 61
AG7
C
560 573Right-handed alpha
Helix 62
AG8
C
593 597Right-handed 310
Helix 63
AG9
C
603 608Right-handed alpha
Helix 64
AH1
C
609 613Right-handed 310
Helix 65
AH2
C
619 640Right-handed alpha
Helix 66
AH3
C
644 648Right-handed 310
Helix 67
AH4
C
679 688Right-handed alpha
Helix 68
AH5
C
688 697Right-handed alpha
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There are 7 sheets in PDB entry 5YDI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 170first strand
Strand 2
A
173 176anti-parallel
Strand 3
A
218 220parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 181first strand
Strand 2
A
187 195anti-parallel
Strand 3
A
257 263anti-parallel
Strand 4
A
303 307anti-parallel
Strand 5
A
270 276parallel
Strand 6
A
349 359parallel
Strand 7
A
381 385parallel
Strand 8
A
478 483parallel
Strand 9
A
578 583parallel
Strand 10
A
663 667parallel
Strand 11
A
674 676anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
251 252parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 170first strand
Strand 2
B
173 176anti-parallel
Strand 3
B
218 220parallel
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There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 181first strand
Strand 2
B
187 195anti-parallel
Strand 3
B
257 263anti-parallel
Strand 4
B
303 307anti-parallel
Strand 5
B
270 276parallel
Strand 6
B
349 359parallel
Strand 7
B
381 385parallel
Strand 8
B
478 483parallel
Strand 9
B
578 583parallel
Strand 10
B
663 667parallel
Strand 11
B
674 676anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
167 170first strand
Strand 2
C
173 176anti-parallel
Strand 3
C
218 220parallel
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There are 11 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
178 181first strand
Strand 2
C
187 195anti-parallel
Strand 3
C
257 263anti-parallel
Strand 4
C
303 307anti-parallel
Strand 5
C
270 276parallel
Strand 6
C
349 359parallel
Strand 7
C
381 385parallel
Strand 8
C
478 483parallel
Strand 9
C
578 583parallel
Strand 10
C
663 667parallel
Strand 11
C
674 676anti-parallel
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