Analysis of interatomic Contacts of Structural Units in PDB entry:
5YDO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YDO entry

There is 1 chain in PDB entry 5YDO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 94LEU 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 5YDO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
111 123Right-handed alpha
Helix 2
AA2
A
135 137Right-handed 310
Helix 3
AA3
A
138 145Right-handed alpha
Helix 4
AA4
A
204 217Right-handed alpha
Helix 5
AA5
A
230 240Right-handed alpha
Helix 6
AA6
A
249 258Right-handed alpha
Helix 7
AA7
A
285 300Right-handed alpha
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There are 2 sheets in PDB entry 5YDO. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 134first strand
Strand 2
A
102 108parallel
Strand 3
A
150 154parallel
Strand 4
A
271 280anti-parallel
Strand 5
A
164 179anti-parallel
Strand 6
A
244 248anti-parallel
Strand 7
A
195 199parallel
Strand 8
A
222 227parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 134first strand
Strand 2
A
102 108parallel
Strand 3
A
150 154parallel
Strand 4
A
271 280anti-parallel
Strand 5
A
164 179anti-parallel
Strand 6
A
261 263anti-parallel
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