Analysis of interatomic Contacts of Structural Units in PDB entry:
5YDP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YDP entry

There are 3 chains in PDB entry 5YDP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 26GLN 214
B
 PRO 31GLN 214
C
 PRO 31VAL 217
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5YDP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 46Right-handed alpha
Helix 2
AA2
A
52 61Right-handed alpha
Helix 3
AA3
A
63 72Right-handed alpha
Helix 4
AA4
A
73 100Right-handed alpha
Helix 5
AA5
A
103 122Right-handed alpha
Helix 6
AA6
A
122 128Right-handed alpha
Helix 7
AA7
A
136 144Right-handed alpha
Helix 8
AA8
A
146 162Right-handed alpha
Helix 9
AA9
A
168 189Right-handed alpha
Helix 10
AB1
A
194 213Right-handed alpha
Helix 11
AB2
B
32 44Right-handed alpha
Helix 12
AB3
B
52 61Right-handed alpha
Helix 13
AB4
B
63 72Right-handed alpha
Helix 14
AB5
B
73 100Right-handed alpha
Helix 15
AB6
B
103 122Right-handed alpha
Helix 16
AB7
B
122 129Right-handed alpha
Helix 17
AB8
B
136 144Right-handed alpha
Helix 18
AB9
B
146 162Right-handed alpha
Helix 19
AC1
B
168 189Right-handed alpha
Helix 20
AC2
B
195 213Right-handed alpha
Helix 21
AC3
C
32 46Right-handed alpha
Helix 22
AC4
C
52 61Right-handed alpha
Helix 23
AC5
C
63 72Right-handed alpha
Helix 24
AC6
C
73 100Right-handed alpha
Helix 25
AC7
C
103 122Right-handed alpha
Helix 26
AC8
C
136 144Right-handed alpha
Helix 27
AC9
C
145 162Right-handed alpha
Helix 28
AD1
C
168 189Right-handed alpha
Helix 29
AD2
C
195 213Right-handed alpha
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There are no sheets in PDB entry 5YDP
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il