Analysis of interatomic Contacts of Structural Units in PDB entry:
5YDW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YDW entry

There are 2 chains in PDB entry 5YDW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 8LEU 302
B
 ASN 10LEU 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5YDW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 26Right-handed alpha
Helix 2
AA2
A
27 33Right-handed alpha
Helix 3
AA3
A
38 53Right-handed alpha
Helix 4
AA4
A
68 94Right-handed alpha
Helix 5
AA5
A
98 102Right-handed 310
Helix 6
AA6
A
111 122Right-handed alpha
Helix 7
AA7
A
138 145Right-handed alpha
Helix 8
AA8
A
204 217Right-handed alpha
Helix 9
AA9
A
230 240Right-handed alpha
Helix 10
AB1
A
249 258Right-handed alpha
Helix 11
AB2
A
285 298Right-handed alpha
Helix 12
AB3
B
12 21Right-handed alpha
Helix 13
AB4
B
27 35Right-handed alpha
Helix 14
AB5
B
38 54Right-handed alpha
Helix 15
AB6
B
68 93Right-handed alpha
Helix 16
AB7
B
108 123Right-handed alpha
Helix 17
AB8
B
135 146Right-handed alpha
Helix 18
AB9
B
156 161Right-handed 310
Helix 19
AC1
B
204 217Right-handed alpha
Helix 20
AC2
B
230 239Right-handed alpha
Helix 21
AC3
B
249 258Right-handed alpha
Helix 22
AC4
B
285 301Right-handed alpha
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There are 4 sheets in PDB entry 5YDW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
66 67anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 166first strand
Strand 2
B
271 279anti-parallel
Strand 3
B
150 153anti-parallel
Strand 4
B
102 107parallel
Strand 5
B
128 131parallel
Strand 6
A
222 227parallel
Strand 7
A
195 199parallel
Strand 8
A
244 248parallel
Strand 9
A
164 179anti-parallel
Strand 10
A
261 263anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 178first strand
Strand 2
B
244 248anti-parallel
Strand 3
B
195 200parallel
Strand 4
B
222 228parallel
Strand 5
A
129 134parallel
Strand 6
A
103 108parallel
Strand 7
A
150 154parallel
Strand 8
A
271 280anti-parallel
Strand 9
A
164 179anti-parallel
Strand 10
A
261 263anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 263first strand
Strand 2
B
170 178anti-parallel
Strand 3
B
271 279anti-parallel
Strand 4
B
165 166anti-parallel
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