Analysis of interatomic Contacts of Structural Units in PDB entry:
5YE2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5YE2 entry

There are 4 chains in PDB entry 5YE2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 61	GLY 529
B	ARG 61	GLY 529
C	ARG 61	GLY 529
D	ARG 61	GLY 529

There are 56 helices in PDB entry 5YE2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	61	106	Right-handed alpha
Helix 2	AA2	A	112	116	Right-handed 310
Helix 3	AA3	A	121	143	Right-handed alpha
Helix 4	AA4	A	242	246	Right-handed 310
Helix 5	AA5	A	297	333	Right-handed alpha
Helix 6	AA6	A	355	373	Right-handed alpha
Helix 7	AA7	A	374	377	Right-handed 310
Helix 8	AA8	A	378	406	Right-handed alpha
Helix 9	AA9	A	407	412	Right-handed alpha
Helix 10	AB1	A	412	418	Right-handed alpha
Helix 11	AB2	A	420	448	Right-handed alpha
Helix 12	AB3	A	456	469	Right-handed alpha
Helix 13	AB4	A	472	480	Right-handed alpha
Helix 14	AB5	A	487	520	Right-handed alpha
Helix 15	AB6	B	62	106	Right-handed alpha
Helix 16	AB7	B	112	116	Right-handed 310
Helix 17	AB8	B	121	143	Right-handed alpha
Helix 18	AB9	B	242	246	Right-handed 310
Helix 19	AC1	B	297	333	Right-handed alpha
Helix 20	AC2	B	355	373	Right-handed alpha
Helix 21	AC3	B	374	377	Right-handed 310
Helix 22	AC4	B	378	406	Right-handed alpha
Helix 23	AC5	B	407	412	Right-handed alpha
Helix 24	AC6	B	412	418	Right-handed alpha
Helix 25	AC7	B	420	448	Right-handed alpha
Helix 26	AC8	B	456	469	Right-handed alpha
Helix 27	AC9	B	472	480	Right-handed alpha
Helix 28	AD1	B	487	520	Right-handed alpha
Helix 29	AD2	C	62	106	Right-handed alpha
Helix 30	AD3	C	112	116	Right-handed 310
Helix 31	AD4	C	121	143	Right-handed alpha
Helix 32	AD5	C	242	246	Right-handed 310
Helix 33	AD6	C	297	333	Right-handed alpha
Helix 34	AD7	C	355	373	Right-handed alpha
Helix 35	AD8	C	374	377	Right-handed 310
Helix 36	AD9	C	378	406	Right-handed alpha
Helix 37	AE1	C	407	412	Right-handed alpha
Helix 38	AE2	C	412	418	Right-handed alpha
Helix 39	AE3	C	420	448	Right-handed alpha
Helix 40	AE4	C	456	469	Right-handed alpha
Helix 41	AE5	C	472	480	Right-handed alpha
Helix 42	AE6	C	487	520	Right-handed alpha
Helix 43	AE7	D	62	106	Right-handed alpha
Helix 44	AE8	D	112	116	Right-handed 310
Helix 45	AE9	D	121	143	Right-handed alpha
Helix 46	AF1	D	242	246	Right-handed 310
Helix 47	AF2	D	297	333	Right-handed alpha
Helix 48	AF3	D	355	373	Right-handed alpha
Helix 49	AF4	D	374	377	Right-handed 310
Helix 50	AF5	D	378	406	Right-handed alpha
Helix 51	AF6	D	407	412	Right-handed alpha
Helix 52	AF7	D	412	418	Right-handed alpha
Helix 53	AF8	D	420	448	Right-handed alpha
Helix 54	AF9	D	456	469	Right-handed alpha
Helix 55	AG1	D	472	480	Right-handed alpha
Helix 56	AG2	D	487	520	Right-handed alpha

There are 8 sheets in PDB entry 5YE2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	A	271	282	anti-parallel
Strand 3	A	253	263	anti-parallel
Strand 4	A	228	240	anti-parallel
Strand 5	A	163	169	anti-parallel
Strand 6	A	190	195	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	176	first strand
Strand 2	A	181	183	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	119	first strand
Strand 2	B	271	282	anti-parallel
Strand 3	B	253	263	anti-parallel
Strand 4	B	228	240	anti-parallel
Strand 5	B	163	169	anti-parallel
Strand 6	B	190	195	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	176	first strand
Strand 2	B	181	183	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	119	first strand
Strand 2	C	271	282	anti-parallel
Strand 3	C	253	263	anti-parallel
Strand 4	C	228	240	anti-parallel
Strand 5	C	163	169	anti-parallel
Strand 6	C	190	195	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	176	first strand
Strand 2	C	181	183	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	119	first strand
Strand 2	D	271	282	anti-parallel
Strand 3	D	253	263	anti-parallel
Strand 4	D	228	240	anti-parallel
Strand 5	D	163	169	anti-parallel
Strand 6	D	190	195	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	174	176	first strand
Strand 2	D	181	183	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5YE2

Analysis of interatomic Contacts of Structural Units in PDB entry:
5YE2