Analysis of interatomic Contacts of Structural Units in PDB entry:
5YE5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YE5 entry

There are 4 chains in PDB entry 5YE5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 36GLN 543
B
 THR 36GLN 543
C
 THR 36GLN 543
D
 THR 36GLN 543
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 5YE5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 45Right-handed alpha
Helix 2
AA2
A
62 106Right-handed alpha
Helix 3
AA3
A
121 143Right-handed alpha
Helix 4
AA4
A
177 180Right-handed 310
Helix 5
AA5
A
242 248Right-handed 310
Helix 6
AA6
A
297 337Right-handed alpha
Helix 7
AA7
A
355 373Right-handed alpha
Helix 8
AA8
A
375 378Right-handed 310
Helix 9
AA9
A
379 407Right-handed alpha
Helix 10
AB1
A
412 448Right-handed alpha
Helix 11
AB2
A
456 469Right-handed alpha
Helix 12
AB3
A
469 483Right-handed alpha
Helix 13
AB4
A
487 529Right-handed alpha
Helix 14
AB5
A
537 543Right-handed alpha
Helix 15
AB6
B
37 45Right-handed alpha
Helix 16
AB7
B
62 106Right-handed alpha
Helix 17
AB8
B
121 143Right-handed alpha
Helix 18
AB9
B
177 180Right-handed 310
Helix 19
AC1
B
242 248Right-handed 310
Helix 20
AC2
B
297 337Right-handed alpha
Helix 21
AC3
B
355 373Right-handed alpha
Helix 22
AC4
B
375 378Right-handed 310
Helix 23
AC5
B
379 407Right-handed alpha
Helix 24
AC6
B
412 448Right-handed alpha
Helix 25
AC7
B
456 469Right-handed alpha
Helix 26
AC8
B
469 483Right-handed alpha
Helix 27
AC9
B
487 529Right-handed alpha
Helix 28
AD1
B
537 543Right-handed alpha
Helix 29
AD2
C
37 45Right-handed alpha
Helix 30
AD3
C
62 106Right-handed alpha
Helix 31
AD4
C
121 143Right-handed alpha
Helix 32
AD5
C
177 180Right-handed 310
Helix 33
AD6
C
242 248Right-handed 310
Helix 34
AD7
C
297 337Right-handed alpha
Helix 35
AD8
C
355 373Right-handed alpha
Helix 36
AD9
C
375 378Right-handed 310
Helix 37
AE1
C
379 407Right-handed alpha
Helix 38
AE2
C
412 448Right-handed alpha
Helix 39
AE3
C
456 469Right-handed alpha
Helix 40
AE4
C
469 483Right-handed alpha
Helix 41
AE5
C
487 529Right-handed alpha
Helix 42
AE6
C
537 543Right-handed alpha
Helix 43
AE7
D
37 45Right-handed alpha
Helix 44
AE8
D
62 106Right-handed alpha
Helix 45
AE9
D
121 143Right-handed alpha
Helix 46
AF1
D
177 180Right-handed 310
Helix 47
AF2
D
242 248Right-handed 310
Helix 48
AF3
D
297 337Right-handed alpha
Helix 49
AF4
D
355 373Right-handed alpha
Helix 50
AF5
D
375 378Right-handed 310
Helix 51
AF6
D
379 407Right-handed alpha
Helix 52
AF7
D
412 448Right-handed alpha
Helix 53
AF8
D
456 469Right-handed alpha
Helix 54
AF9
D
469 483Right-handed alpha
Helix 55
AG1
D
487 529Right-handed alpha
Helix 56
AG2
D
537 543Right-handed alpha
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There are 4 sheets in PDB entry 5YE5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
A
271 282anti-parallel
Strand 3
A
252 263anti-parallel
Strand 4
A
228 241anti-parallel
Strand 5
A
164 176anti-parallel
Strand 6
A
181 194anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 119first strand
Strand 2
B
271 282anti-parallel
Strand 3
B
252 263anti-parallel
Strand 4
B
228 241anti-parallel
Strand 5
B
164 176anti-parallel
Strand 6
B
181 194anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
118 119first strand
Strand 2
C
271 282anti-parallel
Strand 3
C
252 263anti-parallel
Strand 4
C
228 241anti-parallel
Strand 5
C
164 176anti-parallel
Strand 6
C
181 194anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
118 119first strand
Strand 2
D
271 282anti-parallel
Strand 3
D
252 263anti-parallel
Strand 4
D
228 241anti-parallel
Strand 5
D
164 176anti-parallel
Strand 6
D
181 194anti-parallel
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