Analysis of interatomic Contacts of Structural Units in PDB entry:
5YEE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YEE entry

There are 2 chains in PDB entry 5YEE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 THR 5PHE 375
A
 GLY -1ILE 134
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5YEE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
55 61Right-handed alpha
Helix 2
AA2
B
78 92Right-handed alpha
Helix 3
AA3
B
97 101Right-handed 310
Helix 4
AA4
B
112 126Right-handed alpha
Helix 5
AA5
B
137 145Right-handed alpha
Helix 6
AA6
B
181 197Right-handed alpha
Helix 7
AA7
B
202 217Right-handed alpha
Helix 8
AA8
B
222 233Right-handed alpha
Helix 9
AA9
B
252 263Right-handed alpha
Helix 10
AB1
B
264 268Right-handed 310
Helix 11
AB2
B
273 284Right-handed alpha
Helix 12
AB3
B
285 288Right-handed 310
Helix 13
AB4
B
289 295Right-handed alpha
Helix 14
AB5
B
301 305Right-handed 310
Helix 15
AB6
B
308 321Right-handed alpha
Helix 16
AB7
B
337 348Right-handed alpha
Helix 17
AB8
B
349 353Right-handed 310
Helix 18
AB9
B
359 366Right-handed alpha
Helix 19
AC1
B
368 374Right-handed alpha
Helix 20
AC2
A
2 16Right-handed alpha
Helix 21
AC3
A
40 42Right-handed 310
Helix 22
AC4
A
43 52Right-handed alpha
Helix 23
AC5
A
115 118Right-handed 310
Helix 24
AC6
A
119 130Right-handed alpha
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There are 7 sheets in PDB entry 5YEE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 32first strand
Strand 2
B
16 21anti-parallel
Strand 3
B
8 12anti-parallel
Strand 4
B
103 107parallel
Strand 5
B
131 136parallel
Strand 6
B
357 358anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
35 38anti-parallel
Strand 3
B
65 68anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 72first strand
Strand 2
B
75 76anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 170first strand
Strand 2
B
160 166anti-parallel
Strand 3
B
176 178anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 170first strand
Strand 2
B
160 166anti-parallel
Strand 3
B
150 155anti-parallel
Strand 4
B
297 300parallel
Strand 5
B
329 330parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 241first strand
Strand 2
B
247 250anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
104 110anti-parallel
Strand 4
A
92 98anti-parallel
Strand 5
A
82 85anti-parallel
Strand 6
A
70 77anti-parallel
Strand 7
A
64 67anti-parallel
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