Analysis of interatomic Contacts of Structural Units in PDB entry:
5YEL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YEL entry

There are 6 chains in PDB entry 5YEL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 A 1 G 26
A
 PRO 406CYS 577
B
 LYS 405ALA 578
C
 T 1 A 26
F
 A 1 G 26
E
 T 1 A 26
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5YEL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
418 429Right-handed alpha
Helix 2
AA2
A
448 460Right-handed alpha
Helix 3
AA3
A
479 487Right-handed alpha
Helix 4
AA4
A
506 518Right-handed alpha
Helix 5
AA5
A
535 539Right-handed 310
Helix 6
AA6
A
540 546Right-handed alpha
Helix 7
AA7
A
566 576Right-handed alpha
Helix 8
AA8
B
418 429Right-handed alpha
Helix 9
AA9
B
448 459Right-handed alpha
Helix 10
AB1
B
478 487Right-handed alpha
Helix 11
AB2
B
488 490Right-handed 310
Helix 12
AB3
B
506 518Right-handed alpha
Helix 13
AB4
B
535 538Right-handed 310
Helix 14
AB5
B
539 546Right-handed alpha
Helix 15
AB6
B
566 576Right-handed alpha
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There are 5 sheets in PDB entry 5YEL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 468first strand
Strand 2
A
475 478anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
495 496first strand
Strand 2
A
503 504anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
523 524first strand
Strand 2
A
531 532anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
467 468first strand
Strand 2
B
475 476anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
495 496first strand
Strand 2
B
503 504anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il