Analysis of interatomic Contacts of Structural Units in PDB entry:
5YEQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YEQ entry

There are 2 chains in PDB entry 5YEQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2PRO 330
B
 ALA 2PRO 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 5YEQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 10Right-handed 310
Helix 2
AA2
A
11 15Right-handed 310
Helix 3
AA3
A
26 39Right-handed alpha
Helix 4
AA4
A
51 60Right-handed alpha
Helix 5
AA5
A
67 73Right-handed alpha
Helix 6
AA6
A
82 84Right-handed 310
Helix 7
AA7
A
85 94Right-handed alpha
Helix 8
AA8
A
95 98Right-handed 310
Helix 9
AA9
A
109 114Right-handed alpha
Helix 10
AB1
A
133 143Right-handed alpha
Helix 11
AB2
A
160 172Right-handed alpha
Helix 12
AB3
A
173 177Right-handed 310
Helix 13
AB4
A
183 198Right-handed alpha
Helix 14
AB5
A
200 217Right-handed alpha
Helix 15
AB6
A
220 229Right-handed alpha
Helix 16
AB7
A
231 251Right-handed alpha
Helix 17
AB8
A
252 267Right-handed alpha
Helix 18
AB9
A
268 284Right-handed alpha
Helix 19
AC1
A
285 297Right-handed alpha
Helix 20
AC2
A
299 311Right-handed alpha
Helix 21
AC3
A
312 329Right-handed alpha
Helix 22
AC4
B
6 11Right-handed 310
Helix 23
AC5
B
12 17Right-handed alpha
Helix 24
AC6
B
26 39Right-handed alpha
Helix 25
AC7
B
51 60Right-handed alpha
Helix 26
AC8
B
67 73Right-handed alpha
Helix 27
AC9
B
82 94Right-handed alpha
Helix 28
AD1
B
95 98Right-handed 310
Helix 29
AD2
B
109 114Right-handed alpha
Helix 30
AD3
B
133 143Right-handed alpha
Helix 31
AD4
B
160 172Right-handed alpha
Helix 32
AD5
B
173 178Right-handed alpha
Helix 33
AD6
B
183 198Right-handed alpha
Helix 34
AD7
B
200 217Right-handed alpha
Helix 35
AD8
B
220 229Right-handed alpha
Helix 36
AD9
B
231 251Right-handed alpha
Helix 37
AE1
B
252 267Right-handed alpha
Helix 38
AE2
B
268 284Right-handed alpha
Helix 39
AE3
B
285 297Right-handed alpha
Helix 40
AE4
B
299 311Right-handed alpha
Helix 41
AE5
B
312 329Right-handed alpha
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There are 2 sheets in PDB entry 5YEQ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
179 181anti-parallel
Strand 3
A
149 155parallel
Strand 4
A
124 130anti-parallel
Strand 5
A
103 106parallel
Strand 6
A
76 79parallel
Strand 7
A
19 23parallel
Strand 8
A
42 47parallel
Strand 9
A
65 66parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 5first strand
Strand 2
B
179 181anti-parallel
Strand 3
B
149 155parallel
Strand 4
B
124 130anti-parallel
Strand 5
B
103 106parallel
Strand 6
B
76 79parallel
Strand 7
B
19 23parallel
Strand 8
B
42 47parallel
Strand 9
B
65 66parallel
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