Analysis of interatomic Contacts of Structural Units in PDB entry:
5YER


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YER entry

There are 2 chains in PDB entry 5YER (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 94LEU 302
B
 GLY 94LEU 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5YER. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
111 123Right-handed alpha
Helix 2
AA2
A
135 137Right-handed 310
Helix 3
AA3
A
138 145Right-handed alpha
Helix 4
AA4
A
204 217Right-handed alpha
Helix 5
AA5
A
230 240Right-handed alpha
Helix 6
AA6
A
252 259Right-handed alpha
Helix 7
AA7
A
285 299Right-handed alpha
Helix 8
AA8
A
300 302Right-handed 310
Helix 9
AA9
B
111 123Right-handed alpha
Helix 10
AB1
B
135 137Right-handed 310
Helix 11
AB2
B
138 145Right-handed alpha
Helix 12
AB3
B
156 160Right-handed 310
Helix 13
AB4
B
204 217Right-handed alpha
Helix 14
AB5
B
230 240Right-handed alpha
Helix 15
AB6
B
252 259Right-handed alpha
Helix 16
AB7
B
285 297Right-handed alpha
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There are 2 sheets in PDB entry 5YER. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
164 178anti-parallel
Strand 3
A
244 248anti-parallel
Strand 4
A
195 199parallel
Strand 5
A
222 227parallel
Strand 6
B
128 134parallel
Strand 7
B
102 108parallel
Strand 8
B
150 154parallel
Strand 9
B
271 280anti-parallel
Strand 10
B
164 179anti-parallel
Strand 11
B
261 263anti-parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
164 178anti-parallel
Strand 3
A
271 280anti-parallel
Strand 4
A
150 154anti-parallel
Strand 5
A
102 108parallel
Strand 6
A
128 134parallel
Strand 7
B
222 227parallel
Strand 8
B
195 199parallel
Strand 9
B
244 248parallel
Strand 10
B
164 179anti-parallel
Strand 11
B
261 263anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il