Analysis of interatomic Contacts of Structural Units in PDB entry:
5YET


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YET entry

There are 2 chains in PDB entry 5YET (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 137LYS 533
B
 GLU 135MET 531
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5YET. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
138 143Right-handed 310
Helix 2
AA2
A
156 171Right-handed alpha
Helix 3
AA3
A
180 188Right-handed alpha
Helix 4
AA4
A
191 199Right-handed alpha
Helix 5
AA5
A
206 216Right-handed alpha
Helix 6
AA6
A
224 246Right-handed alpha
Helix 7
AA7
A
310 325Right-handed alpha
Helix 8
AA8
A
341 348Right-handed alpha
Helix 9
AA9
A
380 387Right-handed alpha
Helix 10
AB1
A
399 413Right-handed alpha
Helix 11
AB2
A
414 421Right-handed 310
Helix 12
AB3
A
444 450Right-handed alpha
Helix 13
AB4
A
451 468Right-handed alpha
Helix 14
AB5
A
468 482Right-handed alpha
Helix 15
AB6
A
486 502Right-handed alpha
Helix 16
AB7
A
515 530Right-handed alpha
Helix 17
AB8
B
138 143Right-handed 310
Helix 18
AB9
B
156 170Right-handed alpha
Helix 19
AC1
B
180 188Right-handed alpha
Helix 20
AC2
B
191 199Right-handed alpha
Helix 21
AC3
B
206 215Right-handed alpha
Helix 22
AC4
B
224 246Right-handed alpha
Helix 23
AC5
B
310 325Right-handed alpha
Helix 24
AC6
B
341 348Right-handed alpha
Helix 25
AC7
B
380 387Right-handed alpha
Helix 26
AC8
B
399 413Right-handed alpha
Helix 27
AC9
B
414 421Right-handed 310
Helix 28
AD1
B
444 450Right-handed alpha
Helix 29
AD2
B
451 468Right-handed alpha
Helix 30
AD3
B
468 483Right-handed alpha
Helix 31
AD4
B
486 502Right-handed alpha
Helix 32
AD5
B
515 531Right-handed alpha
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There are 6 sheets in PDB entry 5YET. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 149first strand
Strand 2
A
280 281anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 250first strand
Strand 2
A
269 271anti-parallel
Strand 3
A
287 291anti-parallel
Strand 4
A
328 338parallel
Strand 5
A
423 442anti-parallel
Strand 6
A
364 372anti-parallel
Strand 7
A
389 391anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 256first strand
Strand 2
A
264 265anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 149first strand
Strand 2
B
280 281anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
249 250first strand
Strand 2
B
269 271anti-parallel
Strand 3
B
287 291anti-parallel
Strand 4
B
328 338parallel
Strand 5
B
423 442anti-parallel
Strand 6
B
364 372anti-parallel
Strand 7
B
389 391anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 256first strand
Strand 2
B
264 265anti-parallel
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