Analysis of interatomic Contacts of Structural Units in PDB entry:
5YEW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YEW entry

There are 3 chains in PDB entry 5YEW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 5PRO 735
B
 SER 6SER 736
C
 SER 6SER 736
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 5YEW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 42Right-handed alpha
Helix 2
AA2
A
50 73Right-handed alpha
Helix 3
AA3
A
87 96Right-handed alpha
Helix 4
AA4
A
138 144Right-handed alpha
Helix 5
AA5
A
167 171Right-handed 310
Helix 6
AA6
A
185 197Right-handed alpha
Helix 7
AA7
A
213 227Right-handed alpha
Helix 8
AA8
A
238 244Right-handed 310
Helix 9
AA9
A
245 247Right-handed 310
Helix 10
AB1
A
248 266Right-handed alpha
Helix 11
AB2
A
272 278Right-handed alpha
Helix 12
AB3
A
284 293Right-handed alpha
Helix 13
AB4
A
309 329Right-handed alpha
Helix 14
AB5
A
331 363Right-handed alpha
Helix 15
AB6
A
699 734Right-handed alpha
Helix 16
AB7
B
7 42Right-handed alpha
Helix 17
AB8
B
43 46Right-handed 310
Helix 18
AB9
B
50 72Right-handed alpha
Helix 19
AC1
B
87 96Right-handed alpha
Helix 20
AC2
B
138 144Right-handed alpha
Helix 21
AC3
B
167 172Right-handed 310
Helix 22
AC4
B
185 197Right-handed alpha
Helix 23
AC5
B
213 227Right-handed alpha
Helix 24
AC6
B
238 244Right-handed 310
Helix 25
AC7
B
245 247Right-handed 310
Helix 26
AC8
B
248 266Right-handed alpha
Helix 27
AC9
B
272 278Right-handed alpha
Helix 28
AD1
B
284 294Right-handed alpha
Helix 29
AD2
B
309 329Right-handed alpha
Helix 30
AD3
B
331 363Right-handed alpha
Helix 31
AD4
B
702 734Right-handed alpha
Helix 32
AD5
C
7 42Right-handed alpha
Helix 33
AD6
C
50 73Right-handed alpha
Helix 34
AD7
C
87 96Right-handed alpha
Helix 35
AD8
C
135 137Right-handed 310
Helix 36
AD9
C
138 144Right-handed alpha
Helix 37
AE1
C
167 171Right-handed 310
Helix 38
AE2
C
185 197Right-handed alpha
Helix 39
AE3
C
213 227Right-handed alpha
Helix 40
AE4
C
238 244Right-handed 310
Helix 41
AE5
C
245 247Right-handed 310
Helix 42
AE6
C
248 266Right-handed alpha
Helix 43
AE7
C
272 278Right-handed alpha
Helix 44
AE8
C
284 293Right-handed alpha
Helix 45
AE9
C
309 329Right-handed alpha
Helix 46
AF1
C
331 363Right-handed alpha
Helix 47
AF2
C
699 734Right-handed alpha
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There are 3 sheets in PDB entry 5YEW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
124 127anti-parallel
Strand 3
A
157 163anti-parallel
Strand 4
A
112 118parallel
Strand 5
A
174 178anti-parallel
Strand 6
A
76 81parallel
Strand 7
A
201 207parallel
Strand 8
A
231 237parallel
Strand 9
A
280 282parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 135first strand
Strand 2
B
124 127anti-parallel
Strand 3
B
157 163anti-parallel
Strand 4
B
112 118parallel
Strand 5
B
174 178anti-parallel
Strand 6
B
76 81parallel
Strand 7
B
201 207parallel
Strand 8
B
231 237parallel
Strand 9
B
280 282parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
124 127first strand
Strand 2
C
157 163anti-parallel
Strand 3
C
112 118parallel
Strand 4
C
174 178anti-parallel
Strand 5
C
76 81parallel
Strand 6
C
201 206parallel
Strand 7
C
231 236parallel
Strand 8
C
280 282parallel
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