Analysis of interatomic Contacts of Structural Units in PDB entry:
5YF1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YF1 entry

There are 2 chains in PDB entry 5YF1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 57GLN 409
B
 GLU 56GLN 409
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5YF1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 94Right-handed alpha
Helix 2
AA2
A
95 100Right-handed alpha
Helix 3
AA3
A
104 129Right-handed alpha
Helix 4
AA4
A
151 170Right-handed alpha
Helix 5
AA5
A
173 192Right-handed alpha
Helix 6
AA6
A
198 201Right-handed 310
Helix 7
AA7
A
212 221Right-handed alpha
Helix 8
AA8
A
231 244Right-handed alpha
Helix 9
AA9
A
265 270Right-handed alpha
Helix 10
AB1
A
295 300Right-handed alpha
Helix 11
AB2
A
314 318Right-handed 310
Helix 12
AB3
A
320 331Right-handed alpha
Helix 13
AB4
A
360 372Right-handed alpha
Helix 14
AB5
B
57 93Right-handed alpha
Helix 15
AB6
B
95 100Right-handed alpha
Helix 16
AB7
B
104 132Right-handed alpha
Helix 17
AB8
B
133 140Right-handed 310
Helix 18
AB9
B
151 170Right-handed alpha
Helix 19
AC1
B
173 192Right-handed alpha
Helix 20
AC2
B
198 201Right-handed 310
Helix 21
AC3
B
212 221Right-handed alpha
Helix 22
AC4
B
231 245Right-handed alpha
Helix 23
AC5
B
265 270Right-handed alpha
Helix 24
AC6
B
279 283Right-handed 310
Helix 25
AC7
B
295 300Right-handed alpha
Helix 26
AC8
B
314 318Right-handed 310
Helix 27
AC9
B
320 331Right-handed alpha
Helix 28
AD1
B
360 372Right-handed alpha
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There are 4 sheets in PDB entry 5YF1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 293first strand
Strand 2
A
224 229parallel
Strand 3
A
203 206parallel
Strand 4
A
306 312parallel
Strand 5
A
332 342parallel
Strand 6
A
394 406anti-parallel
Strand 7
B
394 406anti-parallel
Strand 8
B
332 342anti-parallel
Strand 9
B
306 312parallel
Strand 10
B
203 207parallel
Strand 11
B
224 229parallel
Strand 12
B
288 293parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 384first strand
Strand 2
A
394 406anti-parallel
Strand 3
B
394 406anti-parallel
Strand 4
B
374 384anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 253first strand
Strand 2
A
273 275anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 253first strand
Strand 2
B
273 275anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il