Analysis of interatomic Contacts of Structural Units in PDB entry:
5YF8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YF8 entry

There is 1 chain in PDB entry 5YF8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 13GLY 671
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5YF8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 23Right-handed alpha
Helix 2
AA2
A
40 45Right-handed alpha
Helix 3
AA3
A
67 86Right-handed alpha
Helix 4
AA4
A
97 104Right-handed 310
Helix 5
AA5
A
136 145Right-handed alpha
Helix 6
AA6
A
161 173Right-handed alpha
Helix 7
AA7
A
183 193Right-handed alpha
Helix 8
AA8
A
197 201Right-handed 310
Helix 9
AA9
A
208 215Right-handed alpha
Helix 10
AB1
A
229 236Right-handed alpha
Helix 11
AB2
A
237 251Right-handed alpha
Helix 12
AB3
A
278 282Right-handed 310
Helix 13
AB4
A
291 307Right-handed alpha
Helix 14
AB5
A
321 323Right-handed 310
Helix 15
AB6
A
324 334Right-handed alpha
Helix 16
AB7
A
348 353Right-handed 310
Helix 17
AB8
A
354 369Right-handed alpha
Helix 18
AB9
A
373 385Right-handed alpha
Helix 19
AC1
A
408 431Right-handed alpha
Helix 20
AC2
A
434 438Right-handed 310
Helix 21
AC3
A
456 465Right-handed alpha
Helix 22
AC4
A
465 472Right-handed alpha
Helix 23
AC5
A
490 494Right-handed 310
Helix 24
AC6
A
518 528Right-handed alpha
Helix 25
AC7
A
539 554Right-handed alpha
Helix 26
AC8
A
556 568Right-handed alpha
Helix 27
AC9
A
586 596Right-handed alpha
Helix 28
AD1
A
598 600Right-handed 310
Helix 29
AD2
A
606 621Right-handed alpha
Helix 30
AD3
A
626 637Right-handed alpha
Helix 31
AD4
A
645 649Right-handed 310
Helix 32
AD5
A
650 658Right-handed alpha
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There are 4 sheets in PDB entry 5YF8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 290first strand
Strand 2
A
258 262anti-parallel
Strand 3
A
386 391parallel
Strand 4
A
396 400anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 446first strand
Strand 2
A
449 455anti-parallel
Strand 3
A
339 343anti-parallel
Strand 4
A
487 488anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 516first strand
Strand 2
A
500 506anti-parallel
Strand 3
A
602 605anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
581 585first strand
Strand 2
A
666 670anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il