Analysis of interatomic Contacts of Structural Units in PDB entry:
5YF9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YF9 entry

There are 2 chains in PDB entry 5YF9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 ALA 6VAL 329
B
 ALA 6VAL 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 5YF9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
X
21 26Right-handed alpha
Helix 2
AA2
X
27 30Right-handed 310
Helix 3
AA3
X
76 89Right-handed alpha
Helix 4
AA4
X
121 126Right-handed alpha
Helix 5
AA5
X
130 151Right-handed alpha
Helix 6
AA6
X
159 161Right-handed 310
Helix 7
AA7
X
195 199Right-handed 310
Helix 8
AA8
X
200 205Right-handed alpha
Helix 9
AA9
X
212 229Right-handed alpha
Helix 10
AB1
X
238 251Right-handed alpha
Helix 11
AB2
X
251 262Right-handed alpha
Helix 12
AB3
X
267 273Right-handed 310
Helix 13
AB4
X
281 286Right-handed 310
Helix 14
AB5
X
290 294Right-handed 310
Helix 15
AB6
X
295 306Right-handed alpha
Helix 16
AB7
X
315 321Right-handed alpha
Helix 17
AB8
X
322 329Right-handed 310
Helix 18
AB9
B
21 26Right-handed alpha
Helix 19
AC1
B
27 30Right-handed 310
Helix 20
AC2
B
75 89Right-handed alpha
Helix 21
AC3
B
121 126Right-handed alpha
Helix 22
AC4
B
130 151Right-handed alpha
Helix 23
AC5
B
159 161Right-handed 310
Helix 24
AC6
B
195 199Right-handed 310
Helix 25
AC7
B
200 205Right-handed alpha
Helix 26
AC8
B
212 229Right-handed alpha
Helix 27
AC9
B
238 251Right-handed alpha
Helix 28
AD1
B
251 262Right-handed alpha
Helix 29
AD2
B
267 272Right-handed 310
Helix 30
AD3
B
281 286Right-handed 310
Helix 31
AD4
B
290 294Right-handed 310
Helix 32
AD5
B
295 306Right-handed alpha
Helix 33
AD6
B
309 313Right-handed 310
Helix 34
AD7
B
315 321Right-handed alpha
Helix 35
AD8
B
322 329Right-handed 310
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There are 6 sheets in PDB entry 5YF9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
35 36first strand
Strand 2
X
98 103parallel
Strand 3
X
110 115anti-parallel
Strand 4
X
65 70anti-parallel
Strand 5
X
54 59anti-parallel
Strand 6
X
40 45anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
153 154first strand
Strand 2
X
181 182anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
163 166first strand
Strand 2
X
171 174anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 36first strand
Strand 2
B
98 103parallel
Strand 3
B
110 115anti-parallel
Strand 4
B
65 70anti-parallel
Strand 5
B
53 59anti-parallel
Strand 6
B
40 45anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 154first strand
Strand 2
B
181 182anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 166first strand
Strand 2
B
171 174anti-parallel
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