Analysis of interatomic Contacts of Structural Units in PDB entry:
5YFB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5YFB entry

There are 2 chains in PDB entry 5YFB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 7	GLU 697
B	HIS 7	LEU 696

There are 61 helices in PDB entry 5YFB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	12	Right-handed 310
Helix 2	AA2	A	24	30	Right-handed alpha
Helix 3	AA3	A	32	48	Right-handed alpha
Helix 4	AA4	A	49	58	Right-handed alpha
Helix 5	AA5	A	60	72	Right-handed alpha
Helix 6	AA6	A	80	89	Right-handed alpha
Helix 7	AA7	A	91	109	Right-handed alpha
Helix 8	AA8	A	125	135	Right-handed alpha
Helix 9	AA9	A	138	155	Right-handed alpha
Helix 10	AB1	A	158	163	Right-handed 310
Helix 11	AB2	A	166	170	Right-handed 310
Helix 12	AB3	A	182	196	Right-handed alpha
Helix 13	AB4	A	246	261	Right-handed alpha
Helix 14	AB5	A	262	264	Right-handed 310
Helix 15	AB6	A	266	283	Right-handed alpha
Helix 16	AB7	A	284	298	Right-handed alpha
Helix 17	AB8	A	334	351	Right-handed alpha
Helix 18	AB9	A	355	359	Right-handed 310
Helix 19	AC1	A	390	397	Right-handed alpha
Helix 20	AC2	A	405	410	Right-handed alpha
Helix 21	AC3	A	424	446	Right-handed alpha
Helix 22	AC4	A	487	493	Right-handed alpha
Helix 23	AC5	A	495	512	Right-handed alpha
Helix 24	AC6	A	514	521	Right-handed alpha
Helix 25	AC7	A	525	547	Right-handed alpha
Helix 26	AC8	A	548	551	Right-handed 310
Helix 27	AC9	A	560	576	Right-handed alpha
Helix 28	AD1	A	599	624	Right-handed alpha
Helix 29	AD2	A	626	639	Right-handed alpha
Helix 30	AD3	A	646	655	Right-handed alpha
Helix 31	AD4	A	682	693	Right-handed alpha
Helix 32	AD5	B	7	12	Right-handed 310
Helix 33	AD6	B	24	30	Right-handed alpha
Helix 34	AD7	B	32	48	Right-handed alpha
Helix 35	AD8	B	49	58	Right-handed alpha
Helix 36	AD9	B	60	72	Right-handed alpha
Helix 37	AE1	B	80	89	Right-handed alpha
Helix 38	AE2	B	91	109	Right-handed alpha
Helix 39	AE3	B	125	135	Right-handed alpha
Helix 40	AE4	B	138	155	Right-handed alpha
Helix 41	AE5	B	158	163	Right-handed 310
Helix 42	AE6	B	166	170	Right-handed 310
Helix 43	AE7	B	182	196	Right-handed alpha
Helix 44	AE8	B	246	261	Right-handed alpha
Helix 45	AE9	B	262	264	Right-handed 310
Helix 46	AF1	B	266	283	Right-handed alpha
Helix 47	AF2	B	284	298	Right-handed alpha
Helix 48	AF3	B	331	350	Right-handed alpha
Helix 49	AF4	B	355	359	Right-handed 310
Helix 50	AF5	B	390	397	Right-handed alpha
Helix 51	AF6	B	405	409	Right-handed alpha
Helix 52	AF7	B	421	446	Right-handed alpha
Helix 53	AF8	B	487	493	Right-handed alpha
Helix 54	AF9	B	495	512	Right-handed alpha
Helix 55	AG1	B	514	521	Right-handed alpha
Helix 56	AG2	B	525	547	Right-handed alpha
Helix 57	AG3	B	560	576	Right-handed alpha
Helix 58	AG4	B	599	624	Right-handed alpha
Helix 59	AG5	B	626	639	Right-handed alpha
Helix 60	AG6	B	646	655	Right-handed alpha
Helix 61	AG7	B	682	692	Right-handed alpha

There are 13 sheets in PDB entry 5YFB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	21	first strand
Strand 2	A	661	663	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	74	first strand
Strand 2	A	77	78	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	178	first strand
Strand 2	A	203	209	parallel
Strand 3	A	212	218	anti-parallel
Strand 4	A	235	245	parallel
Strand 5	A	226	232	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	311	first strand
Strand 2	A	322	330	anti-parallel
Strand 3	A	367	377	anti-parallel
Strand 4	A	400	404	parallel
Strand 5	A	384	387	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	579	585	first strand
Strand 2	A	591	598	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	666	670	first strand
Strand 2	A	673	677	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	20	first strand
Strand 2	B	661	662	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	74	first strand
Strand 2	B	77	78	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	178	first strand
Strand 2	B	203	209	parallel
Strand 3	B	212	218	anti-parallel
Strand 4	B	235	245	parallel
Strand 5	B	226	232	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	311	first strand
Strand 2	B	322	330	anti-parallel
Strand 3	B	367	377	anti-parallel
Strand 4	B	400	404	parallel
Strand 5	B	384	387	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	551	552	first strand
Strand 2	B	557	558	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	579	585	first strand
Strand 2	B	591	598	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	666	670	first strand
Strand 2	B	673	677	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5YFB

Analysis of interatomic Contacts of Structural Units in PDB entry:
5YFB