Analysis of interatomic Contacts of Structural Units in PDB entry:
5YFC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YFC entry

There are 2 chains in PDB entry 5YFC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 6LEU 695
B
 VAL 6LEU 695
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 5YFC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 12Right-handed 310
Helix 2
AA2
A
24 30Right-handed alpha
Helix 3
AA3
A
32 48Right-handed alpha
Helix 4
AA4
A
49 58Right-handed alpha
Helix 5
AA5
A
60 72Right-handed alpha
Helix 6
AA6
A
80 89Right-handed alpha
Helix 7
AA7
A
91 109Right-handed alpha
Helix 8
AA8
A
125 136Right-handed alpha
Helix 9
AA9
A
138 155Right-handed alpha
Helix 10
AB1
A
158 163Right-handed 310
Helix 11
AB2
A
166 170Right-handed 310
Helix 12
AB3
A
182 197Right-handed alpha
Helix 13
AB4
A
246 262Right-handed alpha
Helix 14
AB5
A
266 283Right-handed alpha
Helix 15
AB6
A
284 298Right-handed alpha
Helix 16
AB7
A
332 351Right-handed alpha
Helix 17
AB8
A
355 359Right-handed 310
Helix 18
AB9
A
390 397Right-handed alpha
Helix 19
AC1
A
405 409Right-handed alpha
Helix 20
AC2
A
421 423Right-handed 310
Helix 21
AC3
A
424 446Right-handed alpha
Helix 22
AC4
A
487 493Right-handed alpha
Helix 23
AC5
A
495 512Right-handed alpha
Helix 24
AC6
A
514 521Right-handed alpha
Helix 25
AC7
A
525 547Right-handed alpha
Helix 26
AC8
A
560 576Right-handed alpha
Helix 27
AC9
A
599 624Right-handed alpha
Helix 28
AD1
A
626 639Right-handed alpha
Helix 29
AD2
A
646 655Right-handed alpha
Helix 30
AD3
A
682 693Right-handed alpha
Helix 31
AD4
B
7 11Right-handed 310
Helix 32
AD5
B
24 30Right-handed alpha
Helix 33
AD6
B
32 48Right-handed alpha
Helix 34
AD7
B
49 58Right-handed alpha
Helix 35
AD8
B
60 72Right-handed alpha
Helix 36
AD9
B
80 89Right-handed alpha
Helix 37
AE1
B
91 109Right-handed alpha
Helix 38
AE2
B
125 136Right-handed alpha
Helix 39
AE3
B
138 155Right-handed alpha
Helix 40
AE4
B
158 163Right-handed 310
Helix 41
AE5
B
166 170Right-handed 310
Helix 42
AE6
B
182 197Right-handed alpha
Helix 43
AE7
B
246 262Right-handed alpha
Helix 44
AE8
B
266 283Right-handed alpha
Helix 45
AE9
B
284 297Right-handed alpha
Helix 46
AF1
B
334 344Right-handed alpha
Helix 47
AF2
B
344 351Right-handed alpha
Helix 48
AF3
B
355 359Right-handed 310
Helix 49
AF4
B
390 397Right-handed alpha
Helix 50
AF5
B
405 409Right-handed alpha
Helix 51
AF6
B
421 423Right-handed 310
Helix 52
AF7
B
424 446Right-handed alpha
Helix 53
AF8
B
487 493Right-handed alpha
Helix 54
AF9
B
495 512Right-handed alpha
Helix 55
AG1
B
514 521Right-handed alpha
Helix 56
AG2
B
525 547Right-handed alpha
Helix 57
AG3
B
560 576Right-handed alpha
Helix 58
AG4
B
599 624Right-handed alpha
Helix 59
AG5
B
626 638Right-handed alpha
Helix 60
AG6
B
646 655Right-handed alpha
Helix 61
AG7
B
682 693Right-handed alpha
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There are 14 sheets in PDB entry 5YFC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 21first strand
Strand 2
A
661 663parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 74first strand
Strand 2
A
77 78anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 178first strand
Strand 2
A
203 209parallel
Strand 3
A
212 218anti-parallel
Strand 4
A
235 245parallel
Strand 5
A
226 232anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 311first strand
Strand 2
A
322 331anti-parallel
Strand 3
A
367 377anti-parallel
Strand 4
A
400 404parallel
Strand 5
A
384 387anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
551 552first strand
Strand 2
A
557 558anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
579 585first strand
Strand 2
A
591 598anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
666 670first strand
Strand 2
A
673 677anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 21first strand
Strand 2
B
661 663parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 74first strand
Strand 2
B
77 78anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 178first strand
Strand 2
B
203 209parallel
Strand 3
B
212 218anti-parallel
Strand 4
B
235 245parallel
Strand 5
B
226 232anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
303 311first strand
Strand 2
B
322 331anti-parallel
Strand 3
B
367 377anti-parallel
Strand 4
B
400 404parallel
Strand 5
B
384 387anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
551 552first strand
Strand 2
B
557 558anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
579 585first strand
Strand 2
B
591 598anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
666 670first strand
Strand 2
B
673 677anti-parallel
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