Analysis of interatomic Contacts of Structural Units in PDB entry:
5YFJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YFJ entry

There are 3 chains in PDB entry 5YFJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3ASP 324
B
 ALA 3ASP 324
C
 ALA 3ASP 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 5YFJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 18Right-handed alpha
Helix 2
AA2
A
23 42Right-handed alpha
Helix 3
AA3
A
46 63Right-handed alpha
Helix 4
AA4
A
69 88Right-handed alpha
Helix 5
AA5
A
91 123Right-handed alpha
Helix 6
AA6
A
137 150Right-handed alpha
Helix 7
AA7
A
165 177Right-handed alpha
Helix 8
AA8
A
185 189Right-handed 310
Helix 9
AA9
A
217 228Right-handed alpha
Helix 10
AB1
A
237 241Right-handed 310
Helix 11
AB2
A
242 248Right-handed 310
Helix 12
AB3
A
257 261Right-handed 310
Helix 13
AB4
A
263 268Right-handed alpha
Helix 14
AB5
A
285 289Right-handed 310
Helix 15
AB6
A
300 302Right-handed 310
Helix 16
AB7
A
303 313Right-handed alpha
Helix 17
AB8
A
314 316Right-handed 310
Helix 18
AB9
B
6 18Right-handed alpha
Helix 19
AC1
B
23 42Right-handed alpha
Helix 20
AC2
B
46 63Right-handed alpha
Helix 21
AC3
B
69 88Right-handed alpha
Helix 22
AC4
B
91 123Right-handed alpha
Helix 23
AC5
B
137 150Right-handed alpha
Helix 24
AC6
B
165 177Right-handed alpha
Helix 25
AC7
B
185 189Right-handed 310
Helix 26
AC8
B
217 228Right-handed alpha
Helix 27
AC9
B
237 241Right-handed 310
Helix 28
AD1
B
242 248Right-handed 310
Helix 29
AD2
B
257 261Right-handed 310
Helix 30
AD3
B
263 269Right-handed alpha
Helix 31
AD4
B
285 289Right-handed 310
Helix 32
AD5
B
300 302Right-handed 310
Helix 33
AD6
B
303 313Right-handed alpha
Helix 34
AD7
B
314 318Right-handed 310
Helix 35
AD8
C
6 18Right-handed alpha
Helix 36
AD9
C
23 42Right-handed alpha
Helix 37
AE1
C
46 63Right-handed alpha
Helix 38
AE2
C
69 88Right-handed alpha
Helix 39
AE3
C
91 123Right-handed alpha
Helix 40
AE4
C
137 150Right-handed alpha
Helix 41
AE5
C
165 177Right-handed alpha
Helix 42
AE6
C
185 189Right-handed 310
Helix 43
AE7
C
217 228Right-handed alpha
Helix 44
AE8
C
237 241Right-handed 310
Helix 45
AE9
C
242 248Right-handed 310
Helix 46
AF1
C
257 261Right-handed 310
Helix 47
AF2
C
263 268Right-handed alpha
Helix 48
AF3
C
285 289Right-handed 310
Helix 49
AF4
C
300 302Right-handed 310
Helix 50
AF5
C
303 312Right-handed alpha
Helix 51
AF6
C
313 318Right-handed 310
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There are 6 sheets in PDB entry 5YFJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 184first strand
Strand 2
A
155 159parallel
Strand 3
A
130 133parallel
Strand 4
A
198 201parallel
Strand 5
A
231 235parallel
Strand 6
A
291 294parallel
Strand 7
A
297 299anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 206first strand
Strand 2
A
212 215anti-parallel
Strand 3
A
281 284anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 184first strand
Strand 2
B
155 159parallel
Strand 3
B
130 133parallel
Strand 4
B
198 201parallel
Strand 5
B
231 235parallel
Strand 6
B
291 294parallel
Strand 7
B
297 299anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 206first strand
Strand 2
B
212 215anti-parallel
Strand 3
B
281 284anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
181 184first strand
Strand 2
C
155 159parallel
Strand 3
C
130 133parallel
Strand 4
C
198 201parallel
Strand 5
C
231 235parallel
Strand 6
C
291 294parallel
Strand 7
C
297 299anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
205 206first strand
Strand 2
C
212 215anti-parallel
Strand 3
C
281 284anti-parallel
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