Analysis of interatomic Contacts of Structural Units in PDB entry:
5YFP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YFP entry

There are 5 chains in PDB entry 5YFP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 611GLU 1332
B
 MET 1SER 971
C
 MET 1GLN 805
D
 GLU 22LYS 1065
E
 SER 3ILE 64
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are258 helices in PDB entry 5YFP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
625 631Right-handed alpha
Helix 2
AA2
A
639 664Right-handed alpha
Helix 3
AA3
A
666 675Right-handed alpha
Helix 4
AA4
A
675 711Right-handed alpha
Helix 5
AA5
A
741 746Right-handed alpha
Helix 6
AA6
A
762 773Right-handed alpha
Helix 7
AA7
A
788 791Right-handed 310
Helix 8
AA8
A
792 822Right-handed alpha
Helix 9
AA9
A
830 838Right-handed alpha
Helix 10
AB1
A
839 845Right-handed alpha
Helix 11
AB2
A
854 860Right-handed alpha
Helix 12
AB3
A
861 866Right-handed alpha
Helix 13
AB4
A
867 879Right-handed alpha
Helix 14
AB5
A
923 928Right-handed alpha
Helix 15
AB6
A
931 936Right-handed alpha
Helix 16
AB7
A
958 963Right-handed alpha
Helix 17
AB8
A
982 993Right-handed alpha
Helix 18
AB9
A
1003 1012Right-handed alpha
Helix 19
AC1
A
1020 1030Right-handed alpha
Helix 20
AC2
A
1041 1053Right-handed alpha
Helix 21
AC3
A
1085 1094Right-handed alpha
Helix 22
AC4
A
1099 1103Right-handed 310
Helix 23
AC5
A
1121 1133Right-handed alpha
Helix 24
AC6
A
1157 1168Right-handed alpha
Helix 25
AC7
A
1187 1195Right-handed alpha
Helix 26
AC8
A
1195 1206Right-handed alpha
Helix 27
AC9
A
1221 1226Right-handed alpha
Helix 28
AD1
A
1300 1307Right-handed alpha
Helix 29
AD2
A
1308 1310Right-handed 310
Helix 30
AD3
B
11 15Right-handed 310
Helix 31
AD4
B
71 87Right-handed alpha
Helix 32
AD5
B
131 151Right-handed alpha
Helix 33
AD6
B
155 171Right-handed alpha
Helix 34
AD7
B
192 197Right-handed alpha
Helix 35
AD8
B
200 211Right-handed alpha
Helix 36
AD9
B
211 231Right-handed alpha
Helix 37
AE1
B
238 247Right-handed alpha
Helix 38
AE2
B
258 267Right-handed alpha
Helix 39
AE3
B
268 273Right-handed alpha
Helix 40
AE4
B
277 305Right-handed alpha
Helix 41
AE5
B
310 331Right-handed alpha
Helix 42
AE6
B
354 385Right-handed alpha
Helix 43
AE7
B
402 407Right-handed alpha
Helix 44
AE8
B
411 419Right-handed 310
Helix 45
AE9
B
458 494Right-handed alpha
Helix 46
AF1
B
498 505Right-handed alpha
Helix 47
AF2
B
528 550Right-handed alpha
Helix 48
AF3
B
595 618Right-handed alpha
Helix 49
AF4
B
624 652Right-handed alpha
Helix 50
AF5
B
686 693Right-handed alpha
Helix 51
AF6
B
694 706Right-handed alpha
Helix 52
AF7
B
707 709Right-handed 310
Helix 53
AF8
B
725 754Right-handed alpha
Helix 54
AF9
B
764 775Right-handed alpha
Helix 55
AG1
B
777 784Right-handed alpha
Helix 56
AG2
B
785 787Right-handed 310
Helix 57
AG3
B
799 826Right-handed alpha
Helix 58
AG4
B
827 832Right-handed alpha
Helix 59
AG5
B
848 865Right-handed alpha
Helix 60
AG6
B
874 891Right-handed alpha
Helix 61
AG7
B
906 918Right-handed alpha
Helix 62
AG8
B
924 935Right-handed alpha
Helix 63
AG9
B
942 952Right-handed alpha
Helix 64
AH1
B
952 960Right-handed alpha
Helix 65
AH2
B
966 971Right-handed 310
Helix 66
AH3
C
3 11Right-handed alpha
Helix 67
AH4
C
18 67Right-handed alpha
Helix 68
AH5
C
70 78Right-handed alpha
Helix 69
AH6
C
91 96Right-handed alpha
Helix 70
AH7
C
100 104Right-handed 310
Helix 71
AH8
C
105 123Right-handed alpha
Helix 72
AH9
C
142 153Right-handed alpha
Helix 73
AI1
C
177 182Right-handed alpha
Helix 74
AI2
C
189 200Right-handed alpha
Helix 75
AI3
C
201 204Right-handed 310
Helix 76
AI4
C
210 235Right-handed alpha
Helix 77
AI5
C
299 304Right-handed alpha
Helix 78
AI6
C
308 313Right-handed alpha
Helix 79
AI7
C
323 346Right-handed alpha
Helix 80
AI8
C
353 368Right-handed alpha
Helix 81
AI9
C
377 379Right-handed 310
Helix 82
AJ1
C
380 395Right-handed alpha
Helix 83
AJ2
C
414 446Right-handed alpha
Helix 84
AJ3
C
463 476Right-handed alpha
Helix 85
AJ4
C
478 483Right-handed alpha
Helix 86
AJ5
C
489 526Right-handed alpha
Helix 87
AJ6
C
540 567Right-handed alpha
Helix 88
AJ7
C
571 580Right-handed alpha
Helix 89
AJ8
C
581 583Right-handed 310
Helix 90
AJ9
C
584 589Right-handed alpha
Helix 91
AK1
C
590 606Right-handed alpha
Helix 92
AK2
C
610 615Right-handed alpha
Helix 93
AK3
C
617 623Right-handed alpha
Helix 94
AK4
C
624 637Right-handed alpha
Helix 95
AK5
C
640 644Right-handed 310
Helix 96
AK6
C
645 663Right-handed alpha
Helix 97
AK7
C
676 678Right-handed 310
Helix 98
AK8
C
679 692Right-handed alpha
Helix 99
AK9
C
693 698Right-handed alpha
Helix 100
AL1
C
710 725Right-handed alpha
Helix 101
AL2
C
727 730Right-handed 310
Helix 102
AL3
C
731 742Right-handed alpha
Helix 103
AL4
C
747 754Right-handed alpha
Helix 104
AL5
C
761 783Right-handed alpha
Helix 105
AL6
D
33 40Right-handed alpha
Helix 106
AL7
D
41 46Right-handed 310
Helix 107
AL8
D
47 52Right-handed alpha
Helix 108
AL9
D
73 83Right-handed alpha
Helix 109
AM1
D
104 120Right-handed alpha
Helix 110
AM2
D
122 133Right-handed alpha
Helix 111
AM3
D
140 175Right-handed alpha
Helix 112
AM4
D
181 196Right-handed alpha
Helix 113
AM5
D
207 227Right-handed alpha
Helix 114
AM6
D
275 293Right-handed alpha
Helix 115
AM7
D
321 333Right-handed alpha
Helix 116
AM8
D
337 369Right-handed alpha
Helix 117
AM9
D
374 380Right-handed 310
Helix 118
AN1
D
393 422Right-handed alpha
Helix 119
AN2
D
432 441Right-handed alpha
Helix 120
AN3
D
442 456Right-handed alpha
Helix 121
AN4
D
504 515Right-handed alpha
Helix 122
AN5
D
561 564Right-handed 310
Helix 123
AN6
D
565 570Right-handed alpha
Helix 124
AN7
D
593 607Right-handed alpha
Helix 125
AN8
D
626 643Right-handed alpha
Helix 126
AN9
D
653 674Right-handed alpha
Helix 127
AO1
D
687 692Right-handed alpha
Helix 128
AO2
D
696 704Right-handed alpha
Helix 129
AO3
D
714 723Right-handed alpha
Helix 130
AO4
D
724 729Right-handed 310
Helix 131
AO5
D
745 768Right-handed alpha
Helix 132
AO6
D
819 854Right-handed alpha
Helix 133
AO7
D
855 858Right-handed 310
Helix 134
AO8
D
875 896Right-handed alpha
Helix 135
AO9
D
897 921Right-handed alpha
Helix 136
AP1
D
927 949Right-handed alpha
Helix 137
AP2
D
955 969Right-handed alpha
Helix 138
AP3
D
971 978Right-handed alpha
Helix 139
AP4
D
987 1004Right-handed alpha
Helix 140
AP5
D
1046 1054Right-handed alpha
Helix 141
AP6
E
4 9Right-handed 310
Helix 142
AP7
E
10 15Right-handed alpha
Helix 143
AP8
E
16 21Right-handed alpha
Helix 144
AP9
E
59 64Right-handed alpha
Helix 145
AQ1
E
70 96Right-handed alpha
Helix 146
AQ2
E
100 141Right-handed alpha
Helix 147
AQ3
E
141 149Right-handed alpha
Helix 148
AQ4
E
154 171Right-handed alpha
Helix 149
AQ5
E
198 203Right-handed alpha
Helix 150
AQ6
E
215 240Right-handed alpha
Helix 151
AQ7
E
251 256Right-handed alpha
Helix 152
AQ8
E
264 270Right-handed alpha
Helix 153
AQ9
E
318 339Right-handed alpha
Helix 154
AR1
E
343 348Right-handed alpha
Helix 155
AR2
E
352 359Right-handed alpha
Helix 156
AR3
E
361 375Right-handed alpha
Helix 157
AR4
E
376 404Right-handed alpha
Helix 158
AR5
E
406 411Right-handed alpha
Helix 159
AR6
E
413 427Right-handed alpha
Helix 160
AR7
E
436 453Right-handed alpha
Helix 161
AR8
E
455 460Right-handed alpha
Helix 162
AR9
E
570 591Right-handed alpha
Helix 163
AS1
E
595 610Right-handed alpha
Helix 164
AS2
E
641 668Right-handed alpha
Helix 165
AS3
E
674 679Right-handed alpha
Helix 166
AS4
E
682 694Right-handed alpha
Helix 167
AS5
E
700 713Right-handed alpha
Helix 168
AS6
E
732 742Right-handed alpha
Helix 169
AS7
E
757 774Right-handed alpha
Helix 170
AS8
E
785 794Right-handed alpha
Helix 171
AS9
E
794 802Right-handed alpha
Helix 172
AT1
E
814 821Right-handed alpha
Helix 173
AT2
E
837 842Right-handed 310
Helix 174
AT3
E
849 853Right-handed 310
Helix 175
AT4
F
60 69Right-handed alpha
Helix 176
AT5
F
77 102Right-handed alpha
Helix 177
AT6
F
109 145Right-handed alpha
Helix 178
AT7
F
153 187Right-handed alpha
Helix 179
AT8
F
192 203Right-handed alpha
Helix 180
AT9
F
207 211Right-handed 310
Helix 181
AU1
F
216 224Right-handed alpha
Helix 182
AU2
F
224 240Right-handed alpha
Helix 183
AU3
F
241 248Right-handed alpha
Helix 184
AU4
F
251 266Right-handed alpha
Helix 185
AU5
F
266 274Right-handed alpha
Helix 186
AU6
F
284 291Right-handed alpha
Helix 187
AU7
F
308 319Right-handed alpha
Helix 188
AU8
F
323 326Right-handed 310
Helix 189
AU9
F
327 341Right-handed alpha
Helix 190
AV1
F
383 387Right-handed 310
Helix 191
AV2
F
389 406Right-handed alpha
Helix 192
AV3
F
422 442Right-handed alpha
Helix 193
AV4
F
443 450Right-handed 310
Helix 194
AV5
F
454 460Right-handed alpha
Helix 195
AV6
F
461 467Right-handed alpha
Helix 196
AV7
F
475 496Right-handed alpha
Helix 197
AV8
F
502 507Right-handed alpha
Helix 198
AV9
F
520 528Right-handed alpha
Helix 199
AW1
F
559 575Right-handed alpha
Helix 200
AW2
F
589 597Right-handed alpha
Helix 201
AW3
F
601 603Right-handed 310
Helix 202
AW4
F
604 612Right-handed alpha
Helix 203
AW5
F
622 627Right-handed alpha
Helix 204
AW6
F
629 636Right-handed alpha
Helix 205
AW7
F
654 679Right-handed alpha
Helix 206
AW8
F
701 713Right-handed alpha
Helix 207
AW9
F
728 733Right-handed alpha
Helix 208
AX1
F
735 745Right-handed alpha
Helix 209
AX2
F
756 763Right-handed alpha
Helix 210
AX3
F
767 771Right-handed 310
Helix 211
AX4
F
839 848Right-handed alpha
Helix 212
AX5
F
862 867Right-handed alpha
Helix 213
AX6
F
878 886Right-handed alpha
Helix 214
AX7
G
6 67Right-handed alpha
Helix 215
AX8
G
68 70Right-handed 310
Helix 216
AX9
G
74 88Right-handed alpha
Helix 217
AY1
G
89 91Right-handed 310
Helix 218
AY2
G
96 109Right-handed alpha
Helix 219
AY3
G
112 116Right-handed 310
Helix 220
AY4
G
124 154Right-handed alpha
Helix 221
AY5
G
162 167Right-handed alpha
Helix 222
AY6
G
175 192Right-handed alpha
Helix 223
AY7
G
194 217Right-handed alpha
Helix 224
AY8
G
218 223Right-handed alpha
Helix 225
AY9
G
238 260Right-handed alpha
Helix 226
AZ1
G
267 294Right-handed alpha
Helix 227
AZ2
G
304 317Right-handed alpha
Helix 228
AZ3
G
326 358Right-handed alpha
Helix 229
AZ4
G
369 382Right-handed alpha
Helix 230
AZ5
G
385 393Right-handed alpha
Helix 231
AZ6
G
397 402Right-handed 310
Helix 232
AZ7
G
407 411Right-handed 310
Helix 233
AZ8
G
422 451Right-handed alpha
Helix 234
AZ9
G
468 488Right-handed alpha
Helix 235
BA1
G
491 496Right-handed alpha
Helix 236
BA2
G
498 515Right-handed alpha
Helix 237
BA3
G
516 533Right-handed alpha
Helix 238
BA4
G
541 564Right-handed alpha
Helix 239
BA5
G
570 597Right-handed alpha
Helix 240
BA6
G
602 606Right-handed 310
Helix 241
BA7
G
610 620Right-handed alpha
Helix 242
BA8
H
196 257Right-handed alpha
Helix 243
BA9
H
260 272Right-handed alpha
Helix 244
BB1
H
328 335Right-handed alpha
Helix 245
BB2
H
399 401Right-handed 310
Helix 246
BB3
H
430 440Right-handed alpha
Helix 247
BB4
H
446 451Right-handed alpha
Helix 248
BB5
H
455 466Right-handed alpha
Helix 249
BB6
H
527 533Right-handed alpha
Helix 250
BB7
H
533 548Right-handed alpha
Helix 251
BB8
H
551 569Right-handed alpha
Helix 252
BB9
H
579 603Right-handed alpha
Helix 253
BC1
H
609 623Right-handed alpha
Helix 254
BC2
H
624 645Right-handed alpha
Helix 255
BC3
H
652 679Right-handed alpha
Helix 256
BC4
H
684 708Right-handed alpha
Helix 257
BC5
H
717 731Right-handed alpha
Helix 258
BC6
H
737 748Right-handed alpha
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There are 2 sheets in PDB entry 5YFP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
350 357first strand
Strand 2
H
364 372anti-parallel
Strand 3
H
376 381anti-parallel
Strand 4
H
392 397anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
403 404first strand
Strand 2
H
415 416anti-parallel
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