Analysis of interatomic Contacts of Structural Units in PDB entry:
5YFX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YFX entry

There is 1 chain in PDB entry 5YFX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3GLU 323
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5YFX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 18Right-handed alpha
Helix 2
AA2
A
23 42Right-handed alpha
Helix 3
AA3
A
46 63Right-handed alpha
Helix 4
AA4
A
69 87Right-handed alpha
Helix 5
AA5
A
91 123Right-handed alpha
Helix 6
AA6
A
137 150Right-handed alpha
Helix 7
AA7
A
165 176Right-handed alpha
Helix 8
AA8
A
185 190Right-handed 310
Helix 9
AA9
A
217 229Right-handed alpha
Helix 10
AB1
A
237 241Right-handed 310
Helix 11
AB2
A
242 248Right-handed 310
Helix 12
AB3
A
257 261Right-handed 310
Helix 13
AB4
A
263 268Right-handed alpha
Helix 14
AB5
A
285 289Right-handed 310
Helix 15
AB6
A
300 302Right-handed 310
Helix 16
AB7
A
303 313Right-handed alpha
Helix 17
AB8
A
314 317Right-handed 310
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There are 2 sheets in PDB entry 5YFX. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 184first strand
Strand 2
A
155 159parallel
Strand 3
A
130 133parallel
Strand 4
A
198 202parallel
Strand 5
A
231 235parallel
Strand 6
A
291 294parallel
Strand 7
A
297 299anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 206first strand
Strand 2
A
212 215anti-parallel
Strand 3
A
281 284anti-parallel
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