Analysis of interatomic Contacts of Structural Units in PDB entry:
5YGJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YGJ entry

There are 4 chains in PDB entry 5YGJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2LEU 205
B
 THR 2ARG 208
C
 THR 2ARG 208
D
 THR 2ARG 206
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 5YGJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 18Right-handed alpha
Helix 2
AA2
A
21 43Right-handed alpha
Helix 3
AA3
A
55 60Right-handed 310
Helix 4
AA4
A
61 79Right-handed alpha
Helix 5
AA5
A
91 94Right-handed 310
Helix 6
AA6
A
95 109Right-handed alpha
Helix 7
AA7
A
124 137Right-handed alpha
Helix 8
AA8
A
144 152Right-handed alpha
Helix 9
AA9
A
189 193Right-handed 310
Helix 10
AB1
A
194 203Right-handed alpha
Helix 11
AB2
B
10 18Right-handed alpha
Helix 12
AB3
B
21 42Right-handed alpha
Helix 13
AB4
B
54 60Right-handed 310
Helix 14
AB5
B
61 80Right-handed alpha
Helix 15
AB6
B
81 83Right-handed 310
Helix 16
AB7
B
91 94Right-handed 310
Helix 17
AB8
B
95 108Right-handed alpha
Helix 18
AB9
B
124 137Right-handed alpha
Helix 19
AC1
B
144 152Right-handed alpha
Helix 20
AC2
B
189 193Right-handed 310
Helix 21
AC3
B
194 208Right-handed alpha
Helix 22
AC4
C
10 19Right-handed alpha
Helix 23
AC5
C
21 43Right-handed alpha
Helix 24
AC6
C
55 60Right-handed 310
Helix 25
AC7
C
61 80Right-handed alpha
Helix 26
AC8
C
91 94Right-handed 310
Helix 27
AC9
C
95 108Right-handed alpha
Helix 28
AD1
C
124 137Right-handed alpha
Helix 29
AD2
C
144 152Right-handed alpha
Helix 30
AD3
C
189 193Right-handed 310
Helix 31
AD4
C
194 207Right-handed alpha
Helix 32
AD5
D
10 18Right-handed alpha
Helix 33
AD6
D
21 44Right-handed alpha
Helix 34
AD7
D
55 60Right-handed 310
Helix 35
AD8
D
61 80Right-handed alpha
Helix 36
AD9
D
90 94Right-handed 310
Helix 37
AE1
D
95 108Right-handed alpha
Helix 38
AE2
D
124 137Right-handed alpha
Helix 39
AE3
D
144 150Right-handed alpha
Helix 40
AE4
D
170 174Right-handed 310
Helix 41
AE5
D
189 193Right-handed 310
Helix 42
AE6
D
194 206Right-handed alpha
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There are 4 sheets in PDB entry 5YGJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 89first strand
Strand 2
A
116 121parallel
Strand 3
A
47 51parallel
Strand 4
A
3 7parallel
Strand 5
A
160 163parallel
Strand 6
A
182 185parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 89first strand
Strand 2
B
116 121parallel
Strand 3
B
47 51parallel
Strand 4
B
3 7parallel
Strand 5
B
160 163parallel
Strand 6
B
182 185parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
84 89first strand
Strand 2
C
116 121parallel
Strand 3
C
47 51parallel
Strand 4
C
3 7parallel
Strand 5
C
160 163parallel
Strand 6
C
182 185parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
84 87first strand
Strand 2
D
116 120parallel
Strand 3
D
47 51parallel
Strand 4
D
3 7parallel
Strand 5
D
160 163parallel
Strand 6
D
182 185parallel
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