Analysis of interatomic Contacts of Structural Units in PDB entry:
5YGQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YGQ entry

There are 2 chains in PDB entry 5YGQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ASN 342
B
 GLU 3ASN 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5YGQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 27Right-handed alpha
Helix 2
AA2
A
42 49Right-handed alpha
Helix 3
AA3
A
65 77Right-handed alpha
Helix 4
AA4
A
135 139Right-handed 310
Helix 5
AA5
A
148 153Right-handed 310
Helix 6
AA6
A
163 174Right-handed alpha
Helix 7
AA7
A
192 205Right-handed alpha
Helix 8
AA8
A
255 261Right-handed 310
Helix 9
AA9
A
299 319Right-handed alpha
Helix 10
AB1
A
332 340Right-handed alpha
Helix 11
AB2
B
15 27Right-handed alpha
Helix 12
AB3
B
42 48Right-handed alpha
Helix 13
AB4
B
65 77Right-handed alpha
Helix 14
AB5
B
134 138Right-handed 310
Helix 15
AB6
B
148 153Right-handed 310
Helix 16
AB7
B
163 174Right-handed alpha
Helix 17
AB8
B
193 205Right-handed alpha
Helix 18
AB9
B
255 261Right-handed 310
Helix 19
AC1
B
299 319Right-handed alpha
Helix 20
AC2
B
332 339Right-handed alpha
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There are 12 sheets in PDB entry 5YGQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
32 35parallel
Strand 3
A
5 12parallel
Strand 4
A
109 117parallel
Strand 5
A
99 104anti-parallel
Strand 6
A
89 96anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
32 35parallel
Strand 3
A
5 12parallel
Strand 4
A
109 117parallel
Strand 5
A
284 286parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
63 64anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 126first strand
Strand 2
A
251 254anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 241first strand
Strand 2
A
227 232anti-parallel
Strand 3
A
209 219anti-parallel
Strand 4
A
179 184parallel
Strand 5
A
156 160parallel
Strand 6
A
244 247parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 271first strand
Strand 2
A
291 292parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 84first strand
Strand 2
B
32 35parallel
Strand 3
B
5 12parallel
Strand 4
B
109 117parallel
Strand 5
B
99 104anti-parallel
Strand 6
B
89 96anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 84first strand
Strand 2
B
32 35parallel
Strand 3
B
5 12parallel
Strand 4
B
109 117parallel
Strand 5
B
284 286parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
63 64anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 126first strand
Strand 2
B
251 254anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 241first strand
Strand 2
B
227 232anti-parallel
Strand 3
B
209 219anti-parallel
Strand 4
B
179 184parallel
Strand 5
B
156 160parallel
Strand 6
B
244 247parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 271first strand
Strand 2
B
291 292parallel
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