Analysis of interatomic Contacts of Structural Units in PDB entry:
5YGU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YGU entry

There are 2 chains in PDB entry 5YGU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 274
B
 MET 1LEU 158
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5YGU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 35Right-handed alpha
Helix 2
AA2
A
76 87Right-handed alpha
Helix 3
AA3
A
124 128Right-handed 310
Helix 4
AA4
A
171 181Right-handed alpha
Helix 5
AA5
A
217 231Right-handed alpha
Helix 6
AA6
B
46 59Right-handed alpha
Helix 7
AA7
B
80 84Right-handed 310
Helix 8
AA8
B
107 111Right-handed 310
Helix 9
AA9
B
130 136Right-handed alpha
Helix 10
AB1
B
137 139Right-handed 310
Helix 11
AB2
B
140 157Right-handed alpha
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There are 5 sheets in PDB entry 5YGU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
58 64anti-parallel
Strand 3
A
94 99parallel
Strand 4
A
102 108anti-parallel
Strand 5
A
114 117anti-parallel
Strand 6
A
259 262anti-parallel
Strand 7
A
245 250anti-parallel
Strand 8
A
237 242anti-parallel
Strand 9
A
201 208parallel
Strand 10
A
212 213anti-parallel
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There are 16 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 143first strand
Strand 2
A
146 154anti-parallel
Strand 3
A
158 163anti-parallel
Strand 4
A
190 198parallel
Strand 5
A
201 208anti-parallel
Strand 6
A
237 242parallel
Strand 7
A
245 250anti-parallel
Strand 8
A
259 262anti-parallel
Strand 9
A
114 117anti-parallel
Strand 10
A
102 108anti-parallel
Strand 11
A
94 99anti-parallel
Strand 12
A
58 64parallel
Strand 13
A
44 49anti-parallel
Strand 14
A
11 17parallel
Strand 15
A
2 8anti-parallel
Strand 16
A
265 271anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 39first strand
Strand 2
B
7 16anti-parallel
Strand 3
B
94 104parallel
Strand 4
B
65 70anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 39first strand
Strand 2
B
7 16anti-parallel
Strand 3
B
94 104parallel
Strand 4
B
75 78anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 34first strand
Strand 2
B
22 26anti-parallel
Strand 3
B
124 127anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il