Analysis of interatomic Contacts of Structural Units in PDB entry:
5YH1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YH1 entry

There is 1 chain in PDB entry 5YH1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 300ALA 738
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5YH1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
300 320Right-handed alpha
Helix 2
AA2
A
330 353Right-handed alpha
Helix 3
AA3
A
364 386Right-handed alpha
Helix 4
AA4
A
390 395Right-handed alpha
Helix 5
AA5
A
407 426Right-handed alpha
Helix 6
AA6
A
440 442Right-handed 310
Helix 7
AA7
A
443 452Right-handed alpha
Helix 8
AA8
A
476 480Right-handed 310
Helix 9
AA9
A
485 489Right-handed 310
Helix 10
AB1
A
497 510Right-handed alpha
Helix 11
AB2
A
513 518Right-handed alpha
Helix 12
AB3
A
519 529Right-handed alpha
Helix 13
AB4
A
532 545Right-handed alpha
Helix 14
AB5
A
548 567Right-handed alpha
Helix 15
AB6
A
574 579Right-handed alpha
Helix 16
AB7
A
584 611Right-handed alpha
Helix 17
AB8
A
612 614Right-handed 310
Helix 18
AB9
A
641 658Right-handed alpha
Helix 19
AC1
A
679 685Right-handed 310
Helix 20
AC2
A
687 699Right-handed alpha
Helix 21
AC3
A
700 703Right-handed 310
Helix 22
AC4
A
718 720Right-handed 310
Helix 23
AC5
A
721 735Right-handed alpha
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There are 3 sheets in PDB entry 5YH1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 401first strand
Strand 2
A
357 362parallel
Strand 3
A
431 435parallel
Strand 4
A
457 460parallel
Strand 5
A
482 484parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
468 470first strand
Strand 2
A
473 474anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
615 618first strand
Strand 2
A
624 629anti-parallel
Strand 3
A
663 668parallel
Strand 4
A
672 677anti-parallel
Strand 5
A
712 716anti-parallel
Strand 6
A
705 708anti-parallel
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