Analysis of interatomic Contacts of Structural Units in PDB entry:
5YH2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5YH2 entry

There are 4 chains in PDB entry 5YH2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 89	PRO 526
C	SER 134	ASP 551
B	SER 89	PRO 526
D	SER 134	GLY 552

There are 75 helices in PDB entry 5YH2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	90	97	Right-handed alpha
Helix 2	AA2	A	98	102	Right-handed 310
Helix 3	AA3	A	118	139	Right-handed alpha
Helix 4	AA4	A	159	167	Right-handed alpha
Helix 5	AA5	A	178	191	Right-handed alpha
Helix 6	AA6	A	252	256	Right-handed 310
Helix 7	AA7	A	259	273	Right-handed alpha
Helix 8	AA8	A	292	296	Right-handed 310
Helix 9	AA9	A	298	304	Right-handed alpha
Helix 10	AB1	A	317	323	Right-handed alpha
Helix 11	AB2	A	376	382	Right-handed alpha
Helix 12	AB3	A	386	390	Right-handed 310
Helix 13	AB4	A	391	407	Right-handed alpha
Helix 14	AB5	A	419	421	Right-handed 310
Helix 15	AB6	A	442	445	Right-handed 310
Helix 16	AB7	A	446	453	Right-handed alpha
Helix 17	AB8	A	457	466	Right-handed alpha
Helix 18	AB9	A	467	471	Right-handed 310
Helix 19	AC1	A	472	481	Right-handed alpha
Helix 20	AC2	A	482	484	Right-handed 310
Helix 21	AC3	A	491	521	Right-handed alpha
Helix 22	AC4	C	135	142	Right-handed alpha
Helix 23	AC5	C	160	164	Right-handed 310
Helix 24	AC6	C	200	208	Right-handed alpha
Helix 25	AC7	C	219	232	Right-handed alpha
Helix 26	AC8	C	276	280	Right-handed 310
Helix 27	AC9	C	283	297	Right-handed alpha
Helix 28	AD1	C	316	320	Right-handed 310
Helix 29	AD2	C	322	327	Right-handed alpha
Helix 30	AD3	C	348	352	Right-handed 310
Helix 31	AD4	C	393	397	Right-handed 310
Helix 32	AD5	C	400	406	Right-handed alpha
Helix 33	AD6	C	417	431	Right-handed alpha
Helix 34	AD7	C	466	469	Right-handed 310
Helix 35	AD8	C	470	477	Right-handed alpha
Helix 36	AD9	C	481	490	Right-handed alpha
Helix 37	AE1	C	497	506	Right-handed alpha
Helix 38	AE2	C	515	541	Right-handed alpha
Helix 39	AE3	B	90	97	Right-handed alpha
Helix 40	AE4	B	98	103	Right-handed 310
Helix 41	AE5	B	118	140	Right-handed alpha
Helix 42	AE6	B	159	167	Right-handed alpha
Helix 43	AE7	B	178	191	Right-handed alpha
Helix 44	AE8	B	252	256	Right-handed 310
Helix 45	AE9	B	259	273	Right-handed alpha
Helix 46	AF1	B	292	296	Right-handed 310
Helix 47	AF2	B	298	304	Right-handed alpha
Helix 48	AF3	B	317	323	Right-handed alpha
Helix 49	AF4	B	369	374	Right-handed alpha
Helix 50	AF5	B	376	382	Right-handed alpha
Helix 51	AF6	B	391	407	Right-handed alpha
Helix 52	AF7	B	419	421	Right-handed 310
Helix 53	AF8	B	442	445	Right-handed 310
Helix 54	AF9	B	446	453	Right-handed alpha
Helix 55	AG1	B	457	466	Right-handed alpha
Helix 56	AG2	B	467	471	Right-handed 310
Helix 57	AG3	B	472	481	Right-handed alpha
Helix 58	AG4	B	482	484	Right-handed 310
Helix 59	AG5	B	491	521	Right-handed alpha
Helix 60	AG6	D	135	142	Right-handed alpha
Helix 61	AG7	D	160	164	Right-handed 310
Helix 62	AG8	D	200	208	Right-handed alpha
Helix 63	AG9	D	219	232	Right-handed alpha
Helix 64	AH1	D	283	297	Right-handed alpha
Helix 65	AH2	D	316	320	Right-handed 310
Helix 66	AH3	D	322	327	Right-handed alpha
Helix 67	AH4	D	348	352	Right-handed 310
Helix 68	AH5	D	393	397	Right-handed 310
Helix 69	AH6	D	400	406	Right-handed alpha
Helix 70	AH7	D	417	431	Right-handed alpha
Helix 71	AH8	D	466	469	Right-handed 310
Helix 72	AH9	D	470	477	Right-handed alpha
Helix 73	AI1	D	481	490	Right-handed alpha
Helix 74	AI2	D	497	505	Right-handed alpha
Helix 75	AI3	D	515	541	Right-handed alpha

There are 16 sheets in PDB entry 5YH2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	197	first strand
Strand 2	A	224	228	anti-parallel
Strand 3	A	233	238	anti-parallel
Strand 4	A	335	342	anti-parallel
Strand 5	A	281	287	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	307	first strand
Strand 2	A	313	315	anti-parallel
Strand 3	A	329	330	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	356	first strand
Strand 2	A	413	417	anti-parallel
Strand 3	A	426	427	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	456	first strand
Strand 2	A	522	523	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	234	239	first strand
Strand 2	C	248	252	anti-parallel
Strand 3	C	257	262	anti-parallel
Strand 4	C	362	366	anti-parallel
Strand 5	C	305	308	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	330	331	first strand
Strand 2	C	337	339	anti-parallel
Strand 3	C	353	354	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	378	380	first strand
Strand 2	C	437	439	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	479	480	first strand
Strand 2	C	546	547	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	197	first strand
Strand 2	B	224	228	anti-parallel
Strand 3	B	233	238	anti-parallel
Strand 4	B	335	342	anti-parallel
Strand 5	B	281	287	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	307	first strand
Strand 2	B	313	315	anti-parallel
Strand 3	B	329	330	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	356	first strand
Strand 2	B	413	417	anti-parallel
Strand 3	B	426	427	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	456	first strand
Strand 2	B	522	523	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	239	first strand
Strand 2	D	248	252	anti-parallel
Strand 3	D	257	262	anti-parallel
Strand 4	D	362	366	anti-parallel
Strand 5	D	305	308	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	330	331	first strand
Strand 2	D	337	339	anti-parallel
Strand 3	D	353	354	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	378	380	first strand
Strand 2	D	437	439	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	479	480	first strand
Strand 2	D	546	547	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5YH2

Analysis of interatomic Contacts of Structural Units in PDB entry:
5YH2